Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0127 ATGACCATATGCAATATAGCATTCATATCAATAATAACAAAGTTAAGAAACATTAGTATTAAGCATAAACAAGTAAAAGTGGATCCAAGAAAGCATGGAAAGTTGCCACTATCTTCACAAACATCAGAGGCTGAAGAGAAAGATGATGTAACAAATGAGTTTGATGATTATGGATCTAGTTGGTACTCAGAAACTGACATGTCTGCTATGGTTTCTACTGTTGCTCAAGTTATGGGAAATAGCACTAATCAGAACCAACATGTGTCACAAATAATCACTTTTCCTGTTTCAGCTTCTATGGTTAACCAAGATTATGCTCACTCATACCCATCTCAACCTCTTCTAGAACAAGATGTGACAAAGAAACCACACTATAGAGGAGTAAGACAAAGACCATGGGGAAAATGGGCAGCAGAAATTCGTGACCCTAAAAAAGCAGCTAGAGTATGGCTTGGAACATTTGAAACAGCAGAAGATGCAGCCATTGCATATGATAAAGCTGCAATCAAATTCAAAGGCACAAAAGCTAAGCTTAATTTCCCTCATATAGTTCAAGGAAACCCTAATGTTTTACCCTTTCATGCAGCTTCTACTACTACTACTAGTGCTATTCCTATTGAACAAACAACAGCAACAACATCATTTAATAATGTTTATCCTAACTCATTGTCCACACATGATTATGTTGATCAACAAGTGTTCCCAAATCTGTTCCAATATGCACAGATTCTTTCTAGTAATGATGCTGAATTGTCTTATTACACCAACCATCTTTTCAACCAGCAACAACAATCTTTCAATTCACAATTTTCTGCTACCAATTTGTCTTCATCCTCATCTTCTTTGTCATCTTTCTACAATCAGCAGCAACAACAAAATGATGATGAAGAAGAAAGACATCATCACCCAGGCCAGTAG 918 0.3638 MTICNIAFISIITKLRNISIKHKQVKVDPRKHGKLPLSSQTSEAEEKDDVTNEFDDYGSSWYSETDMSAMVSTVAQVMGNSTNQNQHVSQIITFPVSASMVNQDYAHSYPSQPLLEQDVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDKAAIKFKGTKAKLNFPHIVQGNPNVLPFHAASTTTTSAIPIEQTTATTSFNNVYPNSLSTHDYVDQQVFPNLFQYAQILSSNDAELSYYTNHLFNQQQQSFNSQFSATNLSSSSSSLSSFYNQQQQQNDDEEERHHHPGQ* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0127 305 PANTHER - 17 283 - -
Lan8g0127 305 PANTHER DNA-BINDING DOMAIN 17 283 IPR044808 GO:0003700|GO:0009873
Lan8g0127 305 MobiDBLite consensus disorder prediction 277 305 - -
Lan8g0127 305 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Lan8g0127 305 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Lan8g0127 305 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Lan8g0127 305 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Lan8g0127 305 MobiDBLite consensus disorder prediction 277 291 - -
Lan8g0127 305 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Lan8g0127 305 MobiDBLite consensus disorder prediction 29 50 - -
Lan8g0127 305 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Lan8g0127 305 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677
Lan8g0127 305 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0127 Lan-Chr8 2041464 2043255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0127 70 298 AP2-EREBP Transcription Factor Family AT5G13330 42.609 6.82e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan8g0127 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0127 - - lang:109354067 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0127 8 2041464 2043255 Lan8g0127 8 2041464 2043255 ECH
Lan8g0127 8 2041464 2043255 Lan5g0242 5 3059959 3062065 ECH
Lan12g0104 12 1189012 1189810 Lan8g0127 8 2041464 2043255 PCT