Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0098 ATGGTTGGAAACGACGACGTTCGTGCTCGGAAAGTGTTCTGGCGCTCCGCCTCTTGGTCCGCCTTCCACACCGCCGCGGACGCCACCCATCCTTCCGGCGAGGCGGGTATTGATTTCGCTGATCCCAATTCCGGTAACGGCCATAATCCACGGTTCCCTCCGCCTCAGCAAAATTCGAAGGCGCGATCGTGCCTCTCGCTGCTGCAGCCGCTGTCCATCGCTCCCCGGAGCTTGGAGGAGTGGCCGAAGGCGAGCTCTGATGATATCAGCGAGTGGCCGCAGAATGCCACCACACCTAGTGGTGGGAGAGGTAATAGTAGCAATAGTGGTAGTAATGGTGAAAGGTTGAAACTTGATTTGTCTTCAATTCATGATAATAGGAATGATAGTAATGGTAATAACAGTGTTGGATTTGTGAAGAGGGAAAAAATTGCTTTTTTCGATAAGGAATGTTCGAAAGTCGCGGATCATGTTTATCTTGGCGGTGATGCTGTTGCTAAAGATAGGGATATATTGAAACACAATGGGATCACTCATGTTTTGAATTGTGTTGGTTTTGTGTGTCCTGAGTATTTTAAGGCCGATTTCGTGTATAGGACATTGTGGTTGCAGGATAGTCCATCCGAGGATATTACTAGTATTCTATATGATGTGTTTGATTATTTTGAGGATGTTAGGGAATTGGGTGGAAGGGTGTTTGTGCATTGTTACCAAGGAGTGTCTCGGTCTACGTCTTTGGTTATTGCATACCTTATGTGGAGGGAAGGTCAGAGCTTTGATGACGCTTTTCAGTATGTTAAGGCAGCAAGGAGTATTGCTGATCCGAATATGGGTTTTGCTTGCCAGTTGTTACAGTGCCAGAAAAGAGTTCATGCCGTTCCCCTTAGCCCTAGCTCTTTACTTAGGATGTATAGAATCGCTCCTCACTCGCTGTATGACCCTTTGCATCTTGTCCCCAAAATGTTGATGGATCCTGCTTCGTCTGGGCTGGATTCTAGAGGCGCATTTATCGTGCACATTCCTTCTGCGGTATATGTTTGGATTGGTAAGAATTGTGAGGCCATCATGGAGAGGGATGCCAGAGGGGCCGTGGGTCAGATCATTCGCTACGAGAAAGTGCAGGGACCTATTATAATGATTAAGGAAGGTGATGAGCCATCTTACTTTTGGGATGCTTTTTCGAAAGTCTTGCCTCTGATGGATAAATCTCGGAATGGAGTGGTAAATATCAAATCAAGTGTTAAGGTTTGGCCTGGTGAGAGGAAAGTGGACTCATATGATGTTGATTTTGAAGTTTTCAGAAGAGCTATTAAGGGAGGTATAGTGCCTCCATTTACATCACCAGAGGATGAACTTGAAACCCTTCTTCCTGCTAGAGAGAGTAGCTGGAGTGCTTTAAGGCGTAAAGTTTCATCCGCTACTATGAAGGAGTTTGTCACAGCCCCTAAGCTACCCTTTCCAAGGGTTTATTCAGATTCGATGTTGTGCATTCATACATCAGAAAATCTATCTCCATCCCTGTCACTGTCATCATCATCATCTTCACCCTTTTATGTCTCACCGTACTCAATTTCTTCTGATTCAAGCACCCACTCAAAGTTCTTGTCAGAATTGTCAACCGATTCTTCCTCTGGAGTTTTGGCTTCGGTTCCAGTACCTTTACCTTTGTCTAACATTTCTAATTTGTCTCTCTCTTCAAGTTCTTCCCAACCAATGTCAAACAGTGCAGATATCCATGGTGTTCAGTTATCACATCCCTATTCTCAGTCAGCCTCTTCACCGTTGAAAAAACTATCTACTTCCCTTGCTGAACACAGAAGCAGTATGTCAAAGTCCTTGAAGTTGCCACTAATGAATGATAAGACACAGGAAATAAATAAACCTTCGACTTTTCATTCCAGTCCAGAAGCTGAAGGCCTTATGAATACAGATTGTGAAAGAGAATGA 1947 0.4468 MVGNDDVRARKVFWRSASWSAFHTAADATHPSGEAGIDFADPNSGNGHNPRFPPPQQNSKARSCLSLLQPLSIAPRSLEEWPKASSDDISEWPQNATTPSGGRGNSSNSGSNGERLKLDLSSIHDNRNDSNGNNSVGFVKREKIAFFDKECSKVADHVYLGGDAVAKDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVRELGGRVFVHCYQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARSIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSLYDPLHLVPKMLMDPASSGLDSRGAFIVHIPSAVYVWIGKNCEAIMERDARGAVGQIIRYEKVQGPIIMIKEGDEPSYFWDAFSKVLPLMDKSRNGVVNIKSSVKVWPGERKVDSYDVDFEVFRRAIKGGIVPPFTSPEDELETLLPARESSWSALRRKVSSATMKEFVTAPKLPFPRVYSDSMLCIHTSENLSPSLSLSSSSSSPFYVSPYSISSDSSTHSKFLSELSTDSSSGVLASVPVPLPLSNISNLSLSSSSSQPMSNSADIHGVQLSHPYSQSASSPLKKLSTSLAEHRSSMSKSLKLPLMNDKTQEINKPSTFHSSPEAEGLMNTDCERE* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0098 648 MobiDBLite consensus disorder prediction 78 115 - -
Lan8g0098 648 ProSiteProfiles Dual specificity protein phosphatase domain profile. 150 292 IPR020422 GO:0006470|GO:0008138
Lan8g0098 648 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 629 - -
Lan8g0098 648 MobiDBLite consensus disorder prediction 29 61 - -
Lan8g0098 648 SUPERFAMILY Actin depolymerizing proteins 299 404 - -
Lan8g0098 648 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 209 270 IPR000387 GO:0016311|GO:0016791
Lan8g0098 648 MobiDBLite consensus disorder prediction 585 648 - -
Lan8g0098 648 CDD DSP 151 285 - -
Lan8g0098 648 MobiDBLite consensus disorder prediction 88 115 - -
Lan8g0098 648 Gene3D Severin 302 397 IPR029006 -
Lan8g0098 648 PANTHER MKPA PROTEIN 1 629 - -
Lan8g0098 648 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 144 291 IPR029021 -
Lan8g0098 648 Gene3D Protein tyrosine phosphatase superfamily 125 292 IPR029021 -
Lan8g0098 648 SMART dsp_5 150 289 IPR020422 GO:0006470|GO:0008138
Lan8g0098 648 MobiDBLite consensus disorder prediction 585 637 - -
Lan8g0098 648 Pfam Dual specificity phosphatase, catalytic domain 158 288 IPR000340 GO:0008138|GO:0016311
Lan8g0098 648 ProSitePatterns Tyrosine specific protein phosphatases active site. 234 244 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0098 Lan-Chr8 1651910 1655624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0098 2 186 Protein tyrosine phosphatase (PTP) family AT3G55270 53.886 2.48e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0098 - - lang:109353381 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0068 2 619099 626074 Lan8g0098 8 1651910 1655624 LSH