Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0096 ATGAAGAGAAAAGGAGAGGTTGATAGCATAACCATGACAAATTTTATGATGTTTGTTTCTCATGGTGGTGAATTTGAGACCAATTATAACAACTCTTCTAACAATCATGTGTATGAGTGCAAGACATGTAAAAGGTGGTTCCCTTCATTTCAAGCACTTGGTGGCCATAGGGCTAGCCACAAGAAACCAAGGTTGATGATGGTAAAAGATAGAGACATTGATAACCAATTGGTTCTAAATTCACAATCACTTTCAAAGCCTAAAACCCATGAGTGCTCAATTTGTGGGTTAGAATTTGCATTAGGGCAAGCCTTGGGTGGCCACATGAGGAGGCATAGAACTTCAAATTTCAATGGAAACATGCAAAATAATACTACTACTATGGTTTTGGATTTGAATTTAACACCCTTTGAGAATGATTTGAAGGTTTTGAAGATTGCAAAGATACCTACTTTGGTTGAATATTTGTAA 471 0.3652 MKRKGEVDSITMTNFMMFVSHGGEFETNYNNSSNNHVYECKTCKRWFPSFQALGGHRASHKKPRLMMVKDRDIDNQLVLNSQSLSKPKTHECSICGLEFALGQALGGHMRRHRTSNFNGNMQNNTTTMVLDLNLTPFENDLKVLKIAKIPTLVEYL* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0096 156 SUPERFAMILY beta-beta-alpha zinc fingers 37 112 IPR036236 -
Lan8g0096 156 Gene3D Classic Zinc Finger 35 112 - -
Lan8g0096 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Lan8g0096 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Lan8g0096 156 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Lan8g0096 156 PANTHER ZINC FINGER PROTEIN ZAT12 11 144 - -
Lan8g0096 156 SMART c2h2final6 38 60 IPR013087 -
Lan8g0096 156 SMART c2h2final6 90 112 IPR013087 -
Lan8g0096 156 PANTHER ZINC FINGER PROTEIN ZAT5 11 144 - -
Lan8g0096 156 Pfam C2H2-type zinc finger 37 63 - -
Lan8g0096 156 Pfam C2H2-type zinc finger 90 114 - -
Lan8g0096 156 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0096 Lan-Chr8 1633991 1634608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0096 1 144 C2H2 Transcription Factor Family AT3G53600 39.130 3.63e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g0096 zf-C2H2_6 1.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0096 - - gmx:100781134 199.134