Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0090 ATGGGTTTTGATGGAAATGGTGCTGATGCTGAGATTGATAATGAATCCGTACTTTACATATCCAACTTGCATTCTGAGGTTACGAACTATGATATTAAGTTGCTCTTCTCTGAAGAGGGTGACTTGAAAAGATACTGCATCCATTATGACAAGAATGGGAAATCAAAAGGGACGGCAGAAGTTGTCTTCGCGAGGCGTTCTGATGCTTTAGCAGCCATAAAGAAATACAACAATATGAAGCTTGATGGGAAAACATTGCAAATTGAGCTTGTTGGAACATGCTCAGTTACTCCTCCTGTTATGCCTCCTTTTCAAAGTAGCTTATTGGGACCAATACCAAATGATGGCCGTGTAAGGTTATCTTCATTTACGGGTTCGGTAACTCCTGATGTTATGCCCCCTTTTCAAAGTAGCTTACTAGGACCAATACCAAATGATGGCCGTAGAAGGTTCCACAATGGCTTTGCACATGGCCGTCTTTCAAGGGGGCCTGGAGAAGGGAAAGCTCTTACCAGAAAGGTATCCGCTAGAGATCTCGATGAAGACTTGGAGAGATATCGGCGCCTTTCAAAGGGCAGTGGACAAGTGAAGGGTCATGCCGGAAAGGTATCTGCTAGAGATCTTGACGATGACTTGGAAAGGTATCACTCACAAGCTATGCAGATAAAAAACAAAGAAAATGAAAAGTGA 690 0.429 MGFDGNGADAEIDNESVLYISNLHSEVTNYDIKLLFSEEGDLKRYCIHYDKNGKSKGTAEVVFARRSDALAAIKKYNNMKLDGKTLQIELVGTCSVTPPVMPPFQSSLLGPIPNDGRVRLSSFTGSVTPDVMPPFQSSLLGPIPNDGRRRFHNGFAHGRLSRGPGEGKALTRKVSARDLDEDLERYRRLSKGSGQVKGHAGKVSARDLDDDLERYHSQAMQIKNKENEK* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0090 229 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 13 187 - -
Lan8g0090 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 86 IPR000504 GO:0003723
Lan8g0090 229 MobiDBLite consensus disorder prediction 190 209 - -
Lan8g0090 229 SUPERFAMILY RNA-binding domain, RBD 11 102 IPR035979 GO:0003676
Lan8g0090 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lan8g0090 229 PANTHER THO COMPLEX SUBUNIT 4A 13 187 - -
Lan8g0090 229 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lan8g0090 229 Coils Coil 205 225 - -
Lan8g0090 229 Gene3D - 6 173 IPR012677 -
Lan8g0090 229 MobiDBLite consensus disorder prediction 141 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0090 Lan-Chr8 1552256 1554723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0090 18 91 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 4.34e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0090 K12881 - gmx:100785926 196.052