Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0061 ATGTCTGAAACCGTCAATGCGGGTGGTGATGAAGTCCCTAAGAACGTGACCATCTACATCAACAACCTTAATGAAAAGATTAAGATTGAGAAGTTGAAGAAATCTTTGGTGGCTGTTTTCTCTCAGTTTGGGAAGATTCTAGAAGTTTTAGCTTTCAAGACTCTCAAGCATAAAGGTCAAGCTTGGGTGGTGTTTGAGAATGTGTCTTCTGCTTCTGATGCCATTAGGCAATTGCAAGGTTTCCCTTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACTAAATCAGATGTAATAGCAAAGGCTGATGGTACTTTTGTTCCCAGGGAAAGACGTAAGAGGCATGATGACAAAGGGAAAAAACGGAAGGACCAGCATGATGCTAATTTAGCTGGAATGGGCATAAATCCAGCGTATGCTGGTGCATATGGTGCAACACCTGCTATACCCTATCCTGGTGGTGCGAAATCTATGGTACCCGAGGCTCCTGCTCCTCCAAATAATATTCTCTTTATCCAGAATCTTCCCAATGAAACAACACCAATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGTTTCAAGGAAGTTAGAATGGTGGAAACAAAGCCCGGAATTGCGTTTGTCGAGTATGGAGATGAGATGCAATCCACGGTCGCAATGCAAGCGCTACAAAGTTTCAAGATAACCCCACAGAACCCTATGTTGATAACTTATGCCAAGAAATAG 732 0.4235 MSETVNAGGDEVPKNVTIYINNLNEKIKIEKLKKSLVAVFSQFGKILEVLAFKTLKHKGQAWVVFENVSSASDAIRQLQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRKRHDDKGKKRKDQHDANLAGMGINPAYAGAYGATPAIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQSFKITPQNPMLITYAKK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0061 243 CDD RRM1_U1A_like 17 94 - -
Lan8g0061 243 Gene3D - 10 114 IPR012677 -
Lan8g0061 243 CDD RRM2_U1A_like 167 239 - -
Lan8g0061 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 230 IPR000504 GO:0003723
Lan8g0061 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lan8g0061 243 SMART rrm1_1 170 239 IPR000504 GO:0003723
Lan8g0061 243 SMART rrm1_1 17 91 IPR000504 GO:0003723
Lan8g0061 243 SUPERFAMILY RNA-binding domain, RBD 15 231 IPR035979 GO:0003676
Lan8g0061 243 MobiDBLite consensus disorder prediction 107 129 - -
Lan8g0061 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 95 IPR000504 GO:0003723
Lan8g0061 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 243 IPR000504 GO:0003723
Lan8g0061 243 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 243 - -
Lan8g0061 243 Gene3D - 157 243 IPR012677 -
Lan8g0061 243 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 8 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0061 Lan-Chr8 838482 843082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0061 18 113 Eukaryotic Initiation Factors Gene Family AT3G16380 27.551 3.07e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0061 K11091 - gmx:100500002 390.193