Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan8g0042 | ATGGTAGACAATGATGATATTCAGCCTCTTGTTTTCGACAATGGAACTGGAATGATGAAGTGTGGATTTGGTGGAGATGATGCCCCACGTGCTGTGTTTCCCAACATTGTAGGTCGTTCAAAAAACAAAAATTTGAACAATGTATATGTTGGTGATGAAGCACAATCTAAGAGGGGTAATTATACTCTTACATATCCCATTAAGCATGGAGTTGTTAACAATTGGGTTGATATGGAAAAGATTTGGCATCATACATTCAAAAATGAACTTCATGTGAACCCAGAAGAACACCCAATTCTTCTAACTGAGGCTCCTCTTAACCCTAAGGCTAATCGTGAAAAGATGACTCAAATCATGTTTGAGAAGTTTAATGTCCCAGCTATGTATGTAGCTATTCAAGCTGTTCTTTCATTATATGCAAGTGGACGTATGACTGGTATTGTGTTAGATTCTGGCGATGGTGTTAGCAACACTGTCCCTGTATACGAAGGTTATTCTCTCCCACATGCTATCCTTCGTCTTGATCTAGCAGGTCATGATCTTAACGATTACTTCATGAAAATTCTGAATGATCGTGGGTATTCTTTTACCACTTCAGCTGAACATGAAATTGTGAGAGATATGAAGGAAAAACTAGGTTATGTTGCCCTAGACTATGAACAAGAACTAGAAGCATCCAAGAACAACACCTCAATTGAAAAGACTTATGAATTACCTGATGGAAATGTCATTACTATTGGTAATGAACGTTTCAGATGTTCAGAAGTTTTGTTCCAACCTTCAATGATTGGAATGGAAGCACAAGGCATTCATGAAATAATATACAACTCCATAATGAAGTGTGATGTTGGTGAAAACGATTTTGATCTGAAGAAAGAGCTTTATGGTAACATTGTTCTTTCAGGTGGATCAACCATGTTCCATGGAATTGCTGATAGAATGAGTAAAGAGATTAGTTCATTAGCACCATGCAGCATGAAGATCAAGGTGGTAGCACCACCTGAGAGAAAATATAGTGTTTGGATTGGTGGTTCAATCTTGACATCCCTAAGCACCTTCCAACAAATGTGGATTGCAAAGGGGGAGTATGATGAGTCTGGCCCATCAATTGTGCATAGAAAGTGCTTCTGA | 1131 | 0.3837 | MVDNDDIQPLVFDNGTGMMKCGFGGDDAPRAVFPNIVGRSKNKNLNNVYVGDEAQSKRGNYTLTYPIKHGVVNNWVDMEKIWHHTFKNELHVNPEEHPILLTEAPLNPKANREKMTQIMFEKFNVPAMYVAIQAVLSLYASGRMTGIVLDSGDGVSNTVPVYEGYSLPHAILRLDLAGHDLNDYFMKILNDRGYSFTTSAEHEIVRDMKEKLGYVALDYEQELEASKNNTSIEKTYELPDGNVITIGNERFRCSEVLFQPSMIGMEAQGIHEIIYNSIMKCDVGENDFDLKKELYGNIVLSGGSTMFHGIADRMSKEISSLAPCSMKIKVVAPPERKYSVWIGGSILTSLSTFQQMWIAKGEYDESGPSIVHRKCF* | 377 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan8g0042 | 376 | ProSitePatterns | Actins signature 1. | 49 | 59 | IPR004001 | - | |
| Lan8g0042 | 376 | Gene3D | - | 134 | 339 | - | - | |
| Lan8g0042 | 376 | PANTHER | ACTIN-97 | 1 | 375 | - | - | |
| Lan8g0042 | 376 | ProSitePatterns | Actins and actin-related proteins signature. | 100 | 112 | IPR020902 | - | |
| Lan8g0042 | 376 | SUPERFAMILY | Actin-like ATPase domain | 5 | 149 | IPR043129 | - | |
| Lan8g0042 | 376 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 177 | - | - | |
| Lan8g0042 | 376 | Gene3D | - | 10 | 370 | - | - | |
| Lan8g0042 | 376 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Lan8g0042 | 376 | PRINTS | Actin signature | 45 | 56 | IPR004000 | - | |
| Lan8g0042 | 376 | PRINTS | Actin signature | 80 | 98 | IPR004000 | - | |
| Lan8g0042 | 376 | PRINTS | Actin signature | 111 | 124 | IPR004000 | - | |
| Lan8g0042 | 376 | PRINTS | Actin signature | 136 | 155 | IPR004000 | - | |
| Lan8g0042 | 376 | PRINTS | Actin signature | 232 | 248 | IPR004000 | - | |
| Lan8g0042 | 376 | SMART | actin_3 | 7 | 376 | IPR004000 | - | |
| Lan8g0042 | 376 | SUPERFAMILY | Actin-like ATPase domain | 143 | 376 | IPR043129 | - | |
| Lan8g0042 | 376 | PANTHER | ACTIN | 1 | 375 | IPR004000 | - | |
| Lan8g0042 | 376 | ProSitePatterns | Actins signature 2. | 357 | 365 | IPR004001 | - | |
| Lan8g0042 | 376 | Gene3D | Actin; Chain A, domain 4 | 176 | 267 | - | - | |
| Lan8g0042 | 376 | Pfam | Actin | 5 | 376 | IPR004000 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan8g0042 | Lan-Chr8 | 345162 | 347942 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan8g0042 | 1 | 376 | Cytoskeleton Gene Families | AT3G12110 | 78.796 | 0.0 | 637 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan8g0042 | K10355 | - | sind:105171914 | 621.698 |