Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0032 ATGAAATTTTCACAAGACATGGATGCACAAATTAATACACCTCATGAGATATTGGAACAATGTAGAATATGCCATGATGAGGACAAAGATTCAAACATGGAAATTCCATGTTCTTGTTGTGGCACCTTGAAGTATGCACATAGAAAATGTGTCCAAAGATGGTGCAATGAGAAAGGTGACACTACCTGTGAGATTTGCCTACAGCAATTTAGTCCTGGCTATAATGCACCACAACCTCACCTATTCCATTATGGTGATTCTCCAATAAATTTTGGATGGGGTATTCAGAATGATGATTTCATGGCAATGTTTAATACTAATCATGAATTATTAGAATCTGAATTGGAATATTCAGCACCCTCTCCAAGTACCCTCAAATGTTTCAGGATCATTGCCATTATTTTTATTGTTCTTCTTGTTTTACATCATGCACTTCCAATTATATTTGTACTCAGTGGAATATTCAGTGGATTACAAGAGTATTCATGGACAATGATCATGTTAGTGTTGTTGAGAGGCATTGAAATGCTTGTACCAATCCATTTATTAGTTAAAGCTATCATTGGGATCCAAAGGCTTCAACACCAGGAGTATCATTCTGATATGCAATCACATGAAGAAAATGACTTAGAACAATCTGAATTGAGTGACATTCATATCCAGTGA 666 0.3559 MKFSQDMDAQINTPHEILEQCRICHDEDKDSNMEIPCSCCGTLKYAHRKCVQRWCNEKGDTTCEICLQQFSPGYNAPQPHLFHYGDSPINFGWGIQNDDFMAMFNTNHELLESELEYSAPSPSTLKCFRIIAIIFIVLLVLHHALPIIFVLSGIFSGLQEYSWTMIMLVLLRGIEMLVPIHLLVKAIIGIQRLQHQEYHSDMQSHEENDLEQSELSDIHIQ* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0032 221 SUPERFAMILY RING/U-box 19 70 - -
Lan8g0032 221 SMART ringv_2 20 67 IPR011016 GO:0008270
Lan8g0032 221 ProSiteProfiles Zinc finger RING-CH-type profile. 13 73 IPR011016 GO:0008270
Lan8g0032 221 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 5 212 IPR033275 -
Lan8g0032 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 76 IPR013083 -
Lan8g0032 221 CDD RING_CH-C4HC3_MARCH 21 66 - -
Lan8g0032 221 Pfam Protein of unknown function (DUF3675) 72 187 IPR022143 -
Lan8g0032 221 MobiDBLite consensus disorder prediction 201 221 - -
Lan8g0032 221 Pfam RING-variant domain 21 66 IPR011016 GO:0008270
Lan8g0032 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 5 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0032 Lan-Chr8 261881 263957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0032 8 66 C3H Transcription Factor Family AT2G37950 41.935 3.95e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0032 - - gmx:100806609 253.062