Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1422 ATGGCTGATTCTCACACCAATGAAGTTGATGCACCTACTGGTACTGATGCTGGAAATGATGTTGTCAAATTGAGTTCTAGGGATCAAAGATTGGCTTTTCCAGGTGAGCCCAAGTGTATTATATGTGGCCGGTATGGTGAGTATATTTGCGACGAAACCGATGATGATGTTTGCAGTTTGGATTGTAAACAATCACTACTTCGTACAATTGCCAAATCCGCCGCATCGACACCTAAAATGGTACCTGCAGCTGATGAATGCTATTATGTTAGACCTAATAATGATGATGATTATGAATTACGAACTCGATCTTTATGTAAGGATCAAGCTGAATTGCTTAGAAAGAAACTTGACATTTATGTGAAGGGTGATGATGAATATGATATGCCTGCACCAATTTTGTCATTCACTTCTTGTGACATCCACGACAAACTCCTACACAATATAGAAGAGGCAGGATATGATATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGACATCCAAAAACAACTTGCTTGTATTGGCCGATACAGGATCTGGAAAGTCTGCTTCTTTTCTTATTCCGATAGTTTCTCGTTGCGTAACTCATCGTCTTGCATTTGCTTCAGATGATAAGAAGAAGCCTTTAGCTCTGGTGTTGACACCTACCAGGGAGCTTTGTATACAGGTTGAAGAGCATGCTAAATTGCTCGGAAAGGGGTTGCCTTTTAAAACTGCACTTGTGGTTGGTGGTTACGCCATGGCTGGACAACTCTACCGCATTCAGCAAGGAGTGGAGTTGATCGTGGGAACCCCGGGACGGCTTATTGATCTTTTAACGAAGCATGAGATTGAATTAGATGATGTCATGACTTTTGTAGTGGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGATCAGGTCATGCAGATATATATGTCTCTGTCACAACCACAGGTCTTGATGTATTCTGCTACAATGTCTAATGATATAGAGAAGATGACTAACTCTCTTGCAAAAGGTACAGTGGTTATCTCTGTTGGGGAACCAAACAGACCAAATAAGGCAGTGAAACAGATAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGATATTTTGTGTAGTAAGCAACATTTTAAGCCTCCTGTCGTGGTATATGTCAGCTCCAGACTTGGGGCTGATCTCCTGGCAAATGCGATAACTGTTGCAACTGGAATTAAAGCGAGTTCAATTCATGGTGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTAGTGGGTGATGTCCCTGTGGTAGTGGCCACTGGAGTTTTGAGTCGGGGGGTTGATCTGTTGGGTGTTCGACAGGTAATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGCAGGGCTTCTAGAATGGGAGATGAAGGTCAATCCATAGTTTTTGTAAATGGGGAGAATAAGAATGTCTTAGTAGAGTTAGTTGATGTTTTAAAATCTGGTGGAGCAGCTATACCTCGGGAACTTGCCAATTCATGGTATACAAAGAAGAGAAAGCAAAGATAG 1578 0.4189 MADSHTNEVDAPTGTDAGNDVVKLSSRDQRLAFPGEPKCIICGRYGEYICDETDDDVCSLDCKQSLLRTIAKSAASTPKMVPAADECYYVRPNNDDDYELRTRSLCKDQAELLRKKLDIYVKGDDEYDMPAPILSFTSCDIHDKLLHNIEEAGYDMPTPVQMQAIPAALTSKNNLLVLADTGSGKSASFLIPIVSRCVTHRLAFASDDKKKPLALVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGYAMAGQLYRIQQGVELIVGTPGRLIDLLTKHEIELDDVMTFVVDEVDCMLQRGFRDQVMQIYMSLSQPQVLMYSATMSNDIEKMTNSLAKGTVVISVGEPNRPNKAVKQIAIWVESKQKKQKLFDILCSKQHFKPPVVVYVSSRLGADLLANAITVATGIKASSIHGEKSMKERREIMQSFLVGDVPVVVATGVLSRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGDEGQSIVFVNGENKNVLVELVDVLKSGGAAIPRELANSWYTKKRKQR* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1422 525 CDD SF2_C_DEAD 355 487 - -
Lan7g1422 525 Pfam Helicase conserved C-terminal domain 368 478 IPR001650 -
Lan7g1422 525 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Lan7g1422 525 MobiDBLite consensus disorder prediction 1 20 - -
Lan7g1422 525 SMART helicmild6 396 478 IPR001650 -
Lan7g1422 525 SMART ultradead3 153 358 IPR014001 -
Lan7g1422 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 517 IPR001650 -
Lan7g1422 525 Gene3D - 346 520 IPR027417 -
Lan7g1422 525 Pfam HIT zinc finger 37 63 IPR007529 -
Lan7g1422 525 Gene3D - 97 345 IPR027417 -
Lan7g1422 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 495 IPR027417 -
Lan7g1422 525 Pfam DEAD/DEAH box helicase 158 331 IPR011545 GO:0003676|GO:0005524
Lan7g1422 525 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 522 - -
Lan7g1422 525 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 19 522 - -
Lan7g1422 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 343 IPR014001 -
Lan7g1422 525 Gene3D - 18 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1422 Lan-Chr7 19708085 19710076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1422 132 515 Eukaryotic Initiation Factors Gene Family AT3G19760 28.682 4.18e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1422 K19466 - gmx:100781473 790.801