Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1414 ATGGCAGATCCTGCTAGTTATGGGAATCTTCAACGTGACATTGACCAAGCACTCATTGCATTAAAGAAAGGTGCTCAGTTAATAAAGTATAGCCGAAAAGCGAAGCCAAAAGTTTGCCCCTTCAGACTCTCTCCGGATGAATCAACACTGATTTGGCTTTCTAAAAAAAAGGAAAGGAACCTGAAATTATCTTCAGTTTCGCGTATTATCCCGGGACAAAGAACTGCTGTGTTTAGAAGATATTTGCAACCAGAAAAGGATTATCTTTCATTTTCACTTGTTTATAACAATGGGGAAAGGACACTTGATCTGATATGCAAGGATAAAGAAGAGTCAGAGCTATGGTTTGAAGGCCTTAAGACATTAATTTCATCTGGAAAGTTTAATTGGCGTACTACAAGTAATTTATCCTATTTTCAGGATGGTGCTGATTTAATTGCGAATGGTCATTCTTTTGGTGCAGCACTAGAGATTACATCAAGCATTGTTGGTGGCAGAGTCTCTATTAGTTCATTTTCTCGTCAACCTTCATCGCGTTCTATACGCTCAGATGTGAAGTCAGAACGCACAAATATGCAACCAAGGACGAGCATTGGAGATGGTTTTCGTATTAGTGTGTCGAGTACACCTAGCACTTCAAGTGTAGGATCAGGACCAGATGACATAGAGTCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGTCAGATGGTGTTGCACCCGAAGGGTATGGGACTCAAGTCCCTTCAACAACTGATGTGCTTGTTCCTAAGCCCTTAGAATCAACTGTTGTTCTTGACGTTCAACAGATTGCATCAGGCGTGCGCCACATTGCTTTAGTCACAAGGCAAGGGGAAGTTTTCACTTGGGGGAAGGAATCTGGTGGTAGACTCGGACATGGAAGCGATAAAGATTTCGGTCACCCTCATCTGGTTGAATTCCTAGCAGTTACTAATGTAGATTTTGTTTCATGTGGAGAGAATCATACATGTGCTGTTTCTACATCAGACGATGTTTTCTCTTGGGGCGACGGTACCTATAATGTTGGACTTTTAGGCCACGGCACTGAGGTCAGCCATTGGATACCAAAGAGGGTATGTGGCCCTTTGGAAGGACTTCAAGTTATATCAATTGCATGTGGGACATGGCATTCAGCATTGGCAACTTGTAATGGAAAACTTTTCACCTTTGGTGATGGAACATTTGGTGTGTTGGGTCATGGAGATAGACAAAGTGTGTCATATCCGAAAGAGGTACAATTACTAAGTGGATTGAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATAGTAGAGGTTATGTTTCAATCTGGTTCTAATGTTTCATCCCGGAAACTTTTCACTTGGGGTGATGGTGACAAATATCGATTAGGACATGGAAACAAGGAAACATATCTTCAACCGACATGTGTCTCTGCGCTTATTGAATATAACTTCCACGAGATAGCATGTGGGCACACTATGACTGTTGCATTAACTACATCTGGCCATTTATTTACCATGGGAGGCGCCGAAAATGGTCAATTAGGAAATCCTCTGTCTGACGGAAAAATACCTATCTTAGTACAAGATAAGTTGGTAGGTGAATTTGTTGAGGAAATATCATGTGGTGCACATCATGTTGCAGTTTTGACGTCAAGAAGTGAACTATACACTTGGGGGAAAGGTGCTAATGGAAGATTAGGACACGGTGACGTAGAGGACCGAAAAACGCCAACGTTGGTGGAAGCCTTGAAAGAAAGGCATGTGAAAAATATCTCATGTGGATCAAACTTCACATCTTGCATATGCATACATAAATGGGTCTCTGGAGTGGACCAATCTGTTTGCTCAGGTTGTAGACAACCATTCGGTTTTACTCGAAAACGGCACAATTGTTATAATTGTGGATTGGTGCATTGCCATGCTTGTAGCTCAAGAAAGGCAATGAAAGCAGCATTGGCTCCAACGCCAGGAAAACCTCATCGTGTGTGTGACCCTTGTTATTCTAAGCTTAAAGCCGTGGAGTCTGGTATTGCAGCCGGTGTTAATAAAAGAGTTGCTACCACGCAGCAACAATCGATAGATGGAAGGGAAAGATTAGGCTATGGAGAAGTAAGGTCTTCGAGACTCTTATCTCCTATGATGATAGAACCAATGAAATTCTTTGATACAAGGACTAATAAGCTTGGAAGCAGATATGATTATTCTTCTTCGATGTCGCGAGCTTCTCAAGTTCCATCAAATTTGCAATTGAAAGATGTTGCATTTCCAAATTCATTTGGTTCCATCCAAAATGTTTTGAGGCCAACTATAACTCCAAGCCTACAACAAACTCAACCACAAGTTTCAAGACCAGCATCACCATACGCAAGAAGGCCAAGCCCGCCGCGTTCTGGAAATCCGGGATTTTCTAGAAGTGTCATTGATAGTTTAAGGAAGACAAATGAGGTTTTGAACCAGGAAACCTCAAAATTGCAGAACCAAATTCGAAGTTTGAAGCAGAAAAGTGATATGAAAGATGTAGACATCAAGAAGCTTCATAAAAATGTTAAGGAAGTTGCATTGTTGGCTGCAGAACATTCTTCTAAGAATAAAACAGTGAAAGATTATTTCGAGTCAATGATAGAACAGTTGAAGGAAATAACTGAGAAGTTACCAGCAGAGATTTCAGACACTGAAAATATGAGAACCATGCTTACTAAAGCAGAAGAATTTCTCAAAGAAAATTCAGAAGATGAAAAAACATATTCCATACTTGAAGAACCTGAGCAACAAAATGAAACAAACACACCAATCTCAAGTAGTAACTCTTGTAAAGTTGATGAACAAAATGAAACAATCTCAAATAGTGAATCATGTAAAGTTGAAGAAGAAAGAATAGAAGAAAACAATGAAGAAGTTGAGACAGAAAGCAATAATAGATCATCTGATGCAAAAGAAGAATCATCAGTACCTTCACAAAGCACTGGAAATGAATCTTCAAAGTTAATGGATTCTTCAAAAGAAGGAGAAGTACAAGTTATTGAACAATTTGAACCAGGTGTTTATGTCACACTTATAGTAAAGAATGGTGGAATCAAAGTTTTCAAAAGAGTTAGATTCAGTAAGAGAAGGTTCCGTGAGCATCAAGCAGAAGAATGGTGGACAAAAAACAAAGACAAGGTGCTTAGGAAGTATAGTAATCCACAACCTACAAATCATGTACCTACTACCACTCCTCCTCCGCCGCCGCCGCCTCCTCCGGCTGAAGAAAATATTGAGGCAGCAGCTTCATGA 3288 0.403 MADPASYGNLQRDIDQALIALKKGAQLIKYSRKAKPKVCPFRLSPDESTLIWLSKKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKEESELWFEGLKTLISSGKFNWRTTSNLSYFQDGADLIANGHSFGAALEITSSIVGGRVSISSFSRQPSSRSIRSDVKSERTNMQPRTSIGDGFRISVSSTPSTSSVGSGPDDIESLGDVYIWGEVWSDGVAPEGYGTQVPSTTDVLVPKPLESTVVLDVQQIASGVRHIALVTRQGEVFTWGKESGGRLGHGSDKDFGHPHLVEFLAVTNVDFVSCGENHTCAVSTSDDVFSWGDGTYNVGLLGHGTEVSHWIPKRVCGPLEGLQVISIACGTWHSALATCNGKLFTFGDGTFGVLGHGDRQSVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHEIACGHTMTVALTTSGHLFTMGGAENGQLGNPLSDGKIPILVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGKGANGRLGHGDVEDRKTPTLVEALKERHVKNISCGSNFTSCICIHKWVSGVDQSVCSGCRQPFGFTRKRHNCYNCGLVHCHACSSRKAMKAALAPTPGKPHRVCDPCYSKLKAVESGIAAGVNKRVATTQQQSIDGRERLGYGEVRSSRLLSPMMIEPMKFFDTRTNKLGSRYDYSSSMSRASQVPSNLQLKDVAFPNSFGSIQNVLRPTITPSLQQTQPQVSRPASPYARRPSPPRSGNPGFSRSVIDSLRKTNEVLNQETSKLQNQIRSLKQKSDMKDVDIKKLHKNVKEVALLAAEHSSKNKTVKDYFESMIEQLKEITEKLPAEISDTENMRTMLTKAEEFLKENSEDEKTYSILEEPEQQNETNTPISSSNSCKVDEQNETISNSESCKVEEERIEENNEEVETESNNRSSDAKEESSVPSQSTGNESSKLMDSSKEGEVQVIEQFEPGVYVTLIVKNGGIKVFKRVRFSKRRFREHQAEEWWTKNKDKVLRKYSNPQPTNHVPTTTPPPPPPPPPAEENIEAAAS* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1414 1095 MobiDBLite consensus disorder prediction 1071 1088 - -
Lan7g1414 1095 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Lan7g1414 1095 SUPERFAMILY RCC1/BLIP-II 225 611 IPR009091 -
Lan7g1414 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Lan7g1414 1095 CDD FYVE_scVPS27p_like 618 672 - -
Lan7g1414 1095 MobiDBLite consensus disorder prediction 955 981 - -
Lan7g1414 1095 Gene3D - 203 347 IPR009091 -
Lan7g1414 1095 Gene3D - 348 451 IPR009091 -
Lan7g1414 1095 ProSiteProfiles BRX domain profile. 1009 1064 IPR013591 -
Lan7g1414 1095 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Lan7g1414 1095 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1071 - -
Lan7g1414 1095 Gene3D - 12 128 IPR011993 -
Lan7g1414 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Lan7g1414 1095 CDD PH_PLC_plant-like 12 124 - -
Lan7g1414 1095 Pfam FYVE zinc finger 610 676 IPR000306 GO:0046872
Lan7g1414 1095 MobiDBLite consensus disorder prediction 174 200 - -
Lan7g1414 1095 MobiDBLite consensus disorder prediction 910 924 - -
Lan7g1414 1095 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Lan7g1414 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 681 IPR013083 -
Lan7g1414 1095 SUPERFAMILY FYVE/PHD zinc finger 610 679 IPR011011 -
Lan7g1414 1095 SUPERFAMILY PH domain-like 13 123 - -
Lan7g1414 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Lan7g1414 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Lan7g1414 1095 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1071 - -
Lan7g1414 1095 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Lan7g1414 1095 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Lan7g1414 1095 Coils Coil 812 839 - -
Lan7g1414 1095 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Lan7g1414 1095 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Lan7g1414 1095 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Lan7g1414 1095 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Lan7g1414 1095 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Lan7g1414 1095 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Lan7g1414 1095 MobiDBLite consensus disorder prediction 776 810 - -
Lan7g1414 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Lan7g1414 1095 SMART fyve_4 608 677 IPR000306 GO:0046872
Lan7g1414 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 284 IPR000408 -
Lan7g1414 1095 Pfam Transcription factor regulating root and shoot growth via Pin3 1010 1063 IPR013591 -
Lan7g1414 1095 MobiDBLite consensus disorder prediction 982 1000 - -
Lan7g1414 1095 MobiDBLite consensus disorder prediction 910 1005 - -
Lan7g1414 1095 Coils Coil 954 977 - -
Lan7g1414 1095 MobiDBLite consensus disorder prediction 925 954 - -
Lan7g1414 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 456 502 IPR000408 -
Lan7g1414 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Lan7g1414 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Lan7g1414 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 337 387 IPR000408 -
Lan7g1414 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Lan7g1414 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Lan7g1414 1095 Gene3D - 452 622 IPR009091 -
Lan7g1414 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Lan7g1414 1095 MobiDBLite consensus disorder prediction 1055 1095 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1414 Lan-Chr7 19666078 19671068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1414 1006 1077 Major Intrinsic Protein MIP AT1G31880 37.500 2.07e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1414 - - gmx:100779684 1515.75