Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1381 ATGGAAATGTCTTCTAGCCCTCGCACCGTTGAAGAGATCTTCAAAGACTATAACGCTCGAAGAATCGGTGTTGTTCGTGCTTTGACTCATGATGTTGATGAATTTTATGGACTCTGTGATCCTGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAAACATGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCCCTTGGAATCAATTTTGCTAGAGACGGTATGAACCGCAGGGACTGGCTGTCTCTCGTTGCTGTTCACAGTGATTCATGGTTGCTTTCCGTGGCATTTTATCTTGGAGCTCGTCTTAATCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAACGATCTTCCCACAGTTTTTGAAGTTGTTACCGACAGGAAACCAATTAAAGAAAAGCCCACTGTGGATAGTGGAAGCAAATCTCGAGGAAGCACCAAGAGATCTAATGATGGGCAAGTTAAAACCAACCCAAGGATTGATGATGGTTATGAGGATGAAGAAGATGAGCATAGCGAAACCCTTTGCGGTAGCTGTGGTGGCAATTACATCGGCGACGAGTTTTGGATCGGCTGTGATATATGTGAAAGATGGTTCCATGGGAAATGTGTGAAGATTACACCTGCAAAGGCTGATAGCATTAAGCAATACAAATGTCCTACATGCACCTTAAGGAAGGGTAGGCCTTAG 717 0.4477 MEMSSSPRTVEEIFKDYNARRIGVVRALTHDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKEKPTVDSGSKSRGSTKRSNDGQVKTNPRIDDGYEDEEDEHSETLCGSCGGNYIGDEFWIGCDICERWFHGKCVKITPAKADSIKQYKCPTCTLRKGRP* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1381 238 CDD PHD_AL_plant 184 234 IPR044104 -
Lan7g1381 238 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Lan7g1381 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 232 IPR013083 -
Lan7g1381 238 SMART PHD_3 184 232 IPR001965 -
Lan7g1381 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Lan7g1381 238 PANTHER CPG BINDING PROTEIN 3 237 IPR045104 GO:0006355|GO:0042393
Lan7g1381 238 MobiDBLite consensus disorder prediction 140 176 - -
Lan7g1381 238 MobiDBLite consensus disorder prediction 148 162 - -
Lan7g1381 238 Pfam PHD-finger 185 232 IPR019787 -
Lan7g1381 238 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Lan7g1381 238 SUPERFAMILY FYVE/PHD zinc finger 173 236 IPR011011 -
Lan7g1381 238 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1381 Lan-Chr7 19138460 19155186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1381 4 237 Alfin-like Transcription Factor Family AT5G05610 76.695 3.08e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan7g1381 Alfin 3.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1381 - - gmx:100779170 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1381 7 19138460 19155186 Lan11g1696 11 33261464 33265305 LSH