Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1374 ATGACGACTCGAATAGCGCCTGGTGTAGGAGCAAACTTGCTTGGTCAACACTCGGCAGAGAGGAATCAAGATGCTACTGCTTATGTCGGCAATCTTGACCCCCAGATATCTGAGGAGTTATTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTCCCGAAGGACAGAGTGACCAACCAGCATCAAGGTTATGGATTTGTTGAGTTTCGGAGTGAAGAAGATGCTGACTATGCCATTAAGGTGCTTAACATGATTAAGCTCTATGGAAAACCAATACGTGTAAATAAGGCATCTCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTAGATGAGAAGCTCCTATATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCACGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTCTGCAATCGTCAAATTACCGTGTCATATGCTTATAAGAAAGACACAAAAGGGGAAAGACATGGTACTCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCAACTGCACAGAAAAGCAGGCCTCATACTTTATTTGCGAGTGGGCCTCCAACACTTCCGAATGCTCCTCAGGGTAATGGTACCATCGCTGCTCCCGTGCCTCCTCGCCCCTTTGTTGCTAATGGAATCGCTCCTCCTATTCCTGCCCTGCGTCCACCACCCCCTCAAGCTGCGACATTCCAGCCTATGCCGGTAGGCGGGCCACCAGCATGGCATCAACAACAGCCAGGTCAAATGCCACATGGTATGCCTCCTCCTCCTCCTCAAATGCAGCAATTCAGGCTACCTCACCCTGGTATGCCGATGCCTCCACCTCCACAAGGTGTTCCGGCTCCTCAAAGGCCTCTTCCCCCACCATCAGTAATGGCAAACCAACAACCACCTGTTTGGCGACCACCACCACCACCTCAGCAACAGGGTGGACTGCCATATGGTTATCCTCAGTCCTCAATGCCACCGCCTCCCAATAATCCTCACATGCCACCACCTTCAAGTTGA 1131 0.4819 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNAPQGNGTIAAPVPPRPFVANGIAPPIPALRPPPPQAATFQPMPVGGPPAWHQQQPGQMPHGMPPPPPQMQQFRLPHPGMPMPPPPQGVPAPQRPLPPPSVMANQQPPVWRPPPPPQQQGGLPYGYPQSSMPPPPNNPHMPPPSS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1374 376 MobiDBLite consensus disorder prediction 257 273 - -
Lan7g1374 376 CDD RRM2_SF3B4 111 193 IPR034159 -
Lan7g1374 376 CDD RRM1_SF3B4 28 100 IPR034158 -
Lan7g1374 376 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Lan7g1374 376 MobiDBLite consensus disorder prediction 193 241 - -
Lan7g1374 376 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 360 - -
Lan7g1374 376 Gene3D - 16 111 IPR012677 -
Lan7g1374 376 MobiDBLite consensus disorder prediction 257 376 - -
Lan7g1374 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Lan7g1374 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Lan7g1374 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Lan7g1374 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Lan7g1374 376 PANTHER TRANSFORMER-2-RELATED 1 360 - -
Lan7g1374 376 MobiDBLite consensus disorder prediction 290 376 - -
Lan7g1374 376 SMART rrm1_1 26 99 IPR000504 GO:0003723
Lan7g1374 376 SMART rrm1_1 113 187 IPR000504 GO:0003723
Lan7g1374 376 Gene3D - 112 200 IPR012677 -
Lan7g1374 376 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1374 Lan-Chr7 19062772 19067603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1374 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 4.75e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1374 K12831 - gmx:100792707 552.362