Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1293 ATGTCTGGCCACAGAAGCTCAAGAGCTTCAAAGTTCACAGATCAGAATGAGATTAATGATCTTGTGTCAAGGTTACAACTACTTCTGCCACAACTGAACCAAACAAACAATTCAAGGCAAACAGTGTCTAAGATCTTGAGTGAAACATGCTGTTACATTAAGAAGTTGCAGAAAGAGGTGGAAGATCTCAGTGAAAAGCTAACCAAATTGATGGATTCTGTGGATATTAGTGATATAGACAGAAGAGTTTTACAAGACTTTCTGCAACAATAA 273 0.3736 MSGHRSSRASKFTDQNEINDLVSRLQLLLPQLNQTNNSRQTVSKILSETCCYIKKLQKEVEDLSEKLTKLMDSVDISDIDRRVLQDFLQQ* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1293 90 Coils Coil 53 73 - -
Lan7g1293 90 Pfam Helix-loop-helix DNA-binding domain 16 57 IPR011598 GO:0046983
Lan7g1293 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 56 IPR011598 GO:0046983
Lan7g1293 90 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
Lan7g1293 90 PANTHER DNA BINDING PROTEIN 1 90 - -
Lan7g1293 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 72 IPR036638 GO:0046983
Lan7g1293 90 Gene3D - 15 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1293 Lan-Chr7 17883752 17884540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1293 2 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 48.000 5.13e-16 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan7g1293 HLH 5.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1293 - - gmx:100790746 95.9005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1293 7 17883752 17884540 Lan11g1771 11 34412915 34414200 LSH