Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1292 ATGGTGAAGGTTCACTCTCCACGATGCTTCATCACTCTCATCCTTCTACTTTTGCCACTGCTTTTAACTACCGCCAACGCGTTCAATCACTATCAGAATAAAAAACAACCAAGGGATGATGATATCCTAGGAGAAGCGAACTTGAAGAATTCATCAATGGCTGAAACGGAAAGGTCGAGTGATGGTGCTTTGAATGAGCATGCAGTTGATAATCCAGATGAGATAGTTTCTATGGTTGACATGACAATCCGCAACTATACAGAGAGAAGGAATCTTAATTTTTTCTCATGCGGGACAGGGAATCCCATTGATGATTGTTGGCGCTGTGACAAGCTTTGGTACCGTAACAGAAAACGCTTAGCCGATTGCGCCATTGGTTTCGGACGCAACGCCATTGGTGGTCGTGATGGACGATACTATGTTGTCACTGATCCAAGTGACAACGATGCTGTCAACCCTAAACCAGGTACTCTCCGCCACGCAGTTATTCAAGACAGGCCCTTATGGATAGTGTTCAAAAGGGACATGGTGATCACATTAAAGCAAGAACTTATCATGAACAGTTTCAAGACCATTGATGCACGTGGTTTTAACGTCCACATTGCTCATGGAGCTTGCATTACAATCCAATACATTACCAATGTCATCATTCATGGACTCAATATTCATGATTGCATTCAAACTGGGAATGCTATGGTTCGAAGTTCGCCTTCACATTTTGGATGGAGGACAATGGCTGATGGGGATGGGATTTCAATCTTTGGTGCGAGTCATATTTGGATTGATCATAACTCTCTTGCTAATTGCTCTGATGGACTTATTGATGCTATTATTGGCTCTACTGCCATCACCATATCCAACAATTTCTTCACTCGCCACAATGAGGTTATGCTATTGGGTCATAGTGATTCTTATGTTCGAGACAAGCATATGCAAGTGACCATTGCATACAACCATTTTGGAGAGGGTCTTGTTCAAAGAATGCCAAGGTGCAGACATGGATATTTCCATGTGGTAAACAATGATTATACTCACTGGGAAATGTATGCAATTGGTGGTAGTGCTAATCCCACAATTAACAGCCAAGGCAACCGATATCTTGCCCCTCTGAACACCCATGCTAAGGAGGTGACAAAGAGGGTGGAAACAGGGGAATATACAGGGGAAGATACATGGAAAAACTGGAATTGGAGATCTGATGGAGATCTTTTACTGAATGGAGCTTATTTTACTGCATCAGGAGCAGGATCTGCAGCAAGTTATGCTAGAGCCTCAAGTTTATCAGCACAATCTTCTTCAGTGGTTGGTACCCTTACCTCTGGTGCTGGTGTTCTTAACTGCCGCAGAGGTATCATGTGTTAA 1362 0.4302 MVKVHSPRCFITLILLLLPLLLTTANAFNHYQNKKQPRDDDILGEANLKNSSMAETERSSDGALNEHAVDNPDEIVSMVDMTIRNYTERRNLNFFSCGTGNPIDDCWRCDKLWYRNRKRLADCAIGFGRNAIGGRDGRYYVVTDPSDNDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGFNVHIAHGACITIQYITNVIIHGLNIHDCIQTGNAMVRSSPSHFGWRTMADGDGISIFGASHIWIDHNSLANCSDGLIDAIIGSTAITISNNFFTRHNEVMLLGHSDSYVRDKHMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPLNTHAKEVTKRVETGEYTGEDTWKNWNWRSDGDLLLNGAYFTASGAGSAASYARASSLSAQSSSVVGTLTSGAGVLNCRRGIMC* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1292 453 SMART amb_all 175 372 IPR002022 -
Lan7g1292 453 Pfam Pectate lyase 202 364 IPR002022 -
Lan7g1292 453 PANTHER PECTATE LYASE 22 450 - -
Lan7g1292 453 Gene3D - 100 446 IPR012334 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Lan7g1292 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Lan7g1292 453 PANTHER PECTATE LYASE 18-RELATED 22 450 IPR045032 GO:0030570
Lan7g1292 453 SUPERFAMILY Pectin lyase-like 78 448 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1292 Lan-Chr7 17872592 17880946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1292 47 453 Polysaccharide Lyase AT4G13710 75.485 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1292 K01728 - gmx:100790659 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1292 7 17872592 17880946 Lan11g1772 11 34416552 34424662 LSH