Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1217 ATGGATTCCACTAACTCTGTTGCTAACAGAACCCGTAGCAAGAAATTTTCACACATGATGAAGTCCTTCAATGCAAAAGCTAAACATGATTTCGAGTTTCTGGGTGATGAAAGCATTTTTGATGGAGAAGTTGTTGGTTCTGTTTCTTCATCTATAGTAAAGGGTAGAGAAAGAAACACGAGCTTGAAGGGTGAAAAAGTTGGAATTTTTGAACATGACTCTGTTTCTTTGGGTAGAGTAAAAATGGTATCTTTATCTGGGTCAAATTCATATTTGTCTAAAAAAAGGAACAATAATCGTTTAAAGGGTAAAAGGGTTGCTGAAACTAAACCCAGTTTTGTGTTTATGGGAAGAAATTATGAAGAGGAGTGTGATGATTTTCTCTATAGTAGTAGTAAACGGATGAAGGGAATGTTCGAGGAGCCGGAACCTGTAGAGGTTATTGAAATTGATGATAGTGACAATGAAATGGGGTTTGATGATCATTGTGAAAAGAAGGAGTTTGATGATGTTGATTGTGGTTTTGGAAAAATGGCATCTTTTTCAGGATCAGCTTCATCATCATTCATACCGAAGGAGGGAGAAAGGAACCATTTGAAGGGTAAAAGGGTTGTTAAACGTGAACCTGATTTCGTGTTTTTGGGACAAGATGAAGAGGGTTGTGAATTTTCATCTGGTACTGGTTGTAAAGGGATGAGGAGAATGTTTGAGGAGGAGTTAGAACCTATAGATATCATTGAAATTGATGATAGTGATGCTGATGATAGTGTTGACGAAAAGGGATTCGAGCATTGCGAAAAGAAGAGTTTTGAGGATGTTGTTGATGGTGATGCTAGAGTTGAAAACTGTGTTCCTATTCATTTGGATGAAGTTAGAAACAGTGAGGAAGAAAATGATGGAGTGAGTGAAAGTGTTTCGGGATTTGACACTGATTATATTTCATCCTCCACTGAAAATGATGAGTCTAGTGACGAAGACTTCCGAGTTGATGATGATAGGGAAACATCAAGTAATGAAAATGATTCAACCTCTGATGATGATGATGATGATGAGAATGAAAGTGATAGATGTAGAAAAAGAATTCGTCGAAATGTGTCATTAGACTCATTACAGAAGGAGACAATTGATTCAGCTATGATCTTCGAAAGCAGTGAACATGAAAACAAAAGAGGAGACAACAAAGACTATGAGAAAACTGATGCTAGTGCTAATGAATGTGTGGATGTTGATACTCAGCCACCAGCATTTGGACAGGGAGGACTTCCATCTAAGTGTTTTTGGGAGAAGGCTGAAGAACCAGTCGAAAAATCGGAATTTAAGCAGGAGCTGAATATGTTGTGGGATGAAATGGATTTTGAGCACAAATCAGAAGAAGTTGATTCCCCGGTTGGAAATGCAAGAGCAGATGAGGCAGAACAAAGTAGAGTAAATTCGACCAACCTTTCGAAGCGTTTCAAGTATCTTGATAAAAGAGAAGAGCATCCTAACAAAAGTACTGATGTGGTTGGCAATGCAAGAGCAGATGACACAGAACAAAGTAGAGTAAATCCAAACAGCCTTTCTAAGCCTTACAACAAGTATCTTTATAAAAGAGAAGAGCATCCTAACAAAGGCGTTGGTGTGGTTGACAATGCAAGGACAAATGAAGCAGAACAAAGTAGAGGAAAGCCAACCAACCTTTGTGAGCATGACAATAGTCTTCATAAAGGAAAAGAGCATCCTAAGAAATGTAGTACTGTGACAAGTGTTTCAACTTCGATGAAAAACGAAGAGAAGAAAGGAAACTCGGCTAAGATATTTAAGATGAAAAAGAGTGAAAAGGAAACAAGGGACATCAATGAGAGTGAGAAAAAAAATACAAATGCCAATGTGACTGATTGTGTGAATATTGTTGGAGACAAGGAGTGTCAGAAAGTTGATGGTCATAAAGTCGAAAGGATACCATCCAAGCCTAAGGAGATGCATTTAATTGAACTACTTGCTGAATGCTTTGGTAAGAAGCATAATTCTGTTAAAGATTATTCGAACGGGTTGGGAGTAAAGCATGATGATGTTCGCTGGCGAGATACTCAGCCACTACCTTGTGGACATGGAGGACTTCCATTGAAGTGCTTTTGGGACAAGGCTGAAGAGCCGATGGAAAAATCAAAAGAAGAGGAGTTGGATATGTTGTGGGAAGAACTGGATTTTGTGCTCAGATCGGAAGAAATTGATTCCAAGGTTGGAAATTCAGAGACAGATGAAGCAGAACCAAGCAGAGGAAGTCCAGCCAGCTTATGTAAGCATGACATAATTCTCGACGACGAGAATGGTATGATCTGCAGAATATGTCACTGGATCTCCATGGACATAAAAAATATCTTCCCACCATTTGCGGATGAGAATGAATTTTCTAGATCGAGAAAGATTACATCACCTGATGGAGTGAATGGCCTACCCTTTGATGGGGCTGAGTTTGTTGATGCTTCTGCTGGCGACAAAGAGGCTGTTTGGTTTCACAAAGAAGGCACTGTTTGGGACTTAATTCCGGATATAAAAAAGTGCTTCTATCCTCATCAACAAGAAGGTCTCGAGTTTATTTGGACAAATTTGGCAGGAACCATTGACCTTCAAAAGTTGAAGAATGCTGATCCTTGTAGTGCAGGTGGATGCATTATATCTCATGCTCCTGGAACTGGAAAAACAAGGTTAACCATTGTTTTTCTTCAGACGTATTTGGAATTATTTCCGCAGTGCCGACCCATCATCATTGCTCCTGCTAGTTTATTGCTCACATGGGAAGATGAGTTTAGAAAATGGAATGTGGAAATTCCATTCCACAACCTGAACAATCTTGAATTATCAGGCAAAGAACAAGTTGATGCTACTAAAAGAGTTGATTTGAATAGAAATTCAAAACCGAATAAGAGCGGCATGCGAATGGTGAAGCTATATTCATGGTTCAAAGAGAAGAGCATTTTAGGAATCAGCTACAATTTGTATGAGAAACTTGCAGGGGCAGAAGCCAGAGCTGATGTAAAAACTGGCAGGCAAAAAACGAAAATCGAAAAAGAGAAGAAATATTCATGTATGAAGAAGAAAGACACCGAAAGTACAGTAATGGGGAAGTTTCTGCGCGAGATTCCCGATTTGTTAGTACTTGATGAAGGCCACACACCTCGTAATCAGAGTAGTTATATTTGGAGAGTCCTTTCAGAAATTCAAACTCAGAAGCGAATTATCCTTTCAGGAACTCCTTTCCAGAATACATTTCTGGAACTCTATAACACACTGTGCTTAGCCAAACCAACTTTTCCAGACACAATACCACCAGAGCTCAAAAAATTCTGCCAGAGTAGATTAATACAGGAAAAGAAAGCACCGAAAGGATTGAGCTGGGAAGCAACTTCTTCTGCCTGCACAACTAGAGATCCTGCTGATGAAAGAATAAACCAGTTGAAATTGCTGATGGATCCTTTTGTTCATGTTCACAAAGGTAGCATTCTTCAAAAGAATCTACTCGGGTTGAGAGAATGTGTGGTGACTTTGAAGCCAGGCAATTTTCAGAAAGCACTTCTACAGAGCATAGAATGTTCTCAGACCACATTTGGGTTTGATCATAAGTTGGCTTTGGTCTCTATCCATCCTTCTCTTTTCCTCCGCTGCCCGCTTTCCGAAAAAGAAGAATCTGTCGTTGACAGGCGTCAACTGGAAGAGCTTGAATTGAGTCCCTATGAAGGTGTCAAAACAAGATTTTTGGTGGAGTTTGTCCGGCTGTGTGATGCACTGAATGAGAAAGTTCTTGTTTTCAGCGAATTCATTGATCCTTTATGTATGGTAATAAAGCAATTTGAGTCAATCTTTGATTGGTCTGAGGGGAAGGAAGTGCTGTATATGCATGGCAAGCTTGGTCAAAAGCAACGGCAGACCCTGATTCATTCCTTCAATGATGCTAATAGCAAAGCAAAGATATTGCTTGCATCCTCAAATGCATGTTCTGAGGGTATTAACTTAACCGGAGCTTCAAGGGTTGTGCTGCTGAATGTTCTTTGGAATCCCTCGAAGGAAAGACAAGCTATTAGCAGAGCATATAGGATTGGCCAAAAGAAAGTTGTTTATACTTATCATCTGATCACACAAGAGAGTTGGGCTAAGTATTGCAAAAGCCAGAAAAAGGATTGGTATTCCGAAAAGATTTTCTCGGATAAGATTACTGGAAGTGGTCAGCAAGGGAGTTCTTCAGTGGCATTAGATGATAAAGTTCTTGATCAGATGATTCACCATGACAAACTCAAGGACATGTTTGGTGACTGCTTCGTAGCCGGAAAGGAAAGAGATTTTGTTGAGACTTGA 4332 0.3959 MDSTNSVANRTRSKKFSHMMKSFNAKAKHDFEFLGDESIFDGEVVGSVSSSIVKGRERNTSLKGEKVGIFEHDSVSLGRVKMVSLSGSNSYLSKKRNNNRLKGKRVAETKPSFVFMGRNYEEECDDFLYSSSKRMKGMFEEPEPVEVIEIDDSDNEMGFDDHCEKKEFDDVDCGFGKMASFSGSASSSFIPKEGERNHLKGKRVVKREPDFVFLGQDEEGCEFSSGTGCKGMRRMFEEELEPIDIIEIDDSDADDSVDEKGFEHCEKKSFEDVVDGDARVENCVPIHLDEVRNSEEENDGVSESVSGFDTDYISSSTENDESSDEDFRVDDDRETSSNENDSTSDDDDDDENESDRCRKRIRRNVSLDSLQKETIDSAMIFESSEHENKRGDNKDYEKTDASANECVDVDTQPPAFGQGGLPSKCFWEKAEEPVEKSEFKQELNMLWDEMDFEHKSEEVDSPVGNARADEAEQSRVNSTNLSKRFKYLDKREEHPNKSTDVVGNARADDTEQSRVNPNSLSKPYNKYLYKREEHPNKGVGVVDNARTNEAEQSRGKPTNLCEHDNSLHKGKEHPKKCSTVTSVSTSMKNEEKKGNSAKIFKMKKSEKETRDINESEKKNTNANVTDCVNIVGDKECQKVDGHKVERIPSKPKEMHLIELLAECFGKKHNSVKDYSNGLGVKHDDVRWRDTQPLPCGHGGLPLKCFWDKAEEPMEKSKEEELDMLWEELDFVLRSEEIDSKVGNSETDEAEPSRGSPASLCKHDIILDDENGMICRICHWISMDIKNIFPPFADENEFSRSRKITSPDGVNGLPFDGAEFVDASAGDKEAVWFHKEGTVWDLIPDIKKCFYPHQQEGLEFIWTNLAGTIDLQKLKNADPCSAGGCIISHAPGTGKTRLTIVFLQTYLELFPQCRPIIIAPASLLLTWEDEFRKWNVEIPFHNLNNLELSGKEQVDATKRVDLNRNSKPNKSGMRMVKLYSWFKEKSILGISYNLYEKLAGAEARADVKTGRQKTKIEKEKKYSCMKKKDTESTVMGKFLREIPDLLVLDEGHTPRNQSSYIWRVLSEIQTQKRIILSGTPFQNTFLELYNTLCLAKPTFPDTIPPELKKFCQSRLIQEKKAPKGLSWEATSSACTTRDPADERINQLKLLMDPFVHVHKGSILQKNLLGLRECVVTLKPGNFQKALLQSIECSQTTFGFDHKLALVSIHPSLFLRCPLSEKEESVVDRRQLEELELSPYEGVKTRFLVEFVRLCDALNEKVLVFSEFIDPLCMVIKQFESIFDWSEGKEVLYMHGKLGQKQRQTLIHSFNDANSKAKILLASSNACSEGINLTGASRVVLLNVLWNPSKERQAISRAYRIGQKKVVYTYHLITQESWAKYCKSQKKDWYSEKIFSDKITGSGQQGSSSVALDDKVLDQMIHHDKLKDMFGDCFVAGKERDFVET* 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1217 1443 CDD SF2_C_SNF 1217 1371 - -
Lan7g1217 1443 MobiDBLite consensus disorder prediction 503 522 - -
Lan7g1217 1443 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 470 1442 - -
Lan7g1217 1443 SMART helicmild6 1275 1360 IPR001650 -
Lan7g1217 1443 SMART ultradead3 845 1109 IPR014001 -
Lan7g1217 1443 MobiDBLite consensus disorder prediction 290 360 - -
Lan7g1217 1443 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1248 1405 IPR001650 -
Lan7g1217 1443 MobiDBLite consensus disorder prediction 300 317 - -
Lan7g1217 1443 MobiDBLite consensus disorder prediction 489 522 - -
Lan7g1217 1443 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 875 1097 IPR014001 -
Lan7g1217 1443 Gene3D - 1169 1430 IPR027417 -
Lan7g1217 1443 Pfam Helicase conserved C-terminal domain 1254 1360 IPR001650 -
Lan7g1217 1443 Gene3D - 826 1133 IPR038718 -
Lan7g1217 1443 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 470 1442 IPR044567 GO:0080188
Lan7g1217 1443 MobiDBLite consensus disorder prediction 556 576 - -
Lan7g1217 1443 MobiDBLite consensus disorder prediction 548 595 - -
Lan7g1217 1443 Pfam SNF2-related domain 861 1185 IPR000330 GO:0005524|GO:0140658
Lan7g1217 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1043 1379 IPR027417 -
Lan7g1217 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1110 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1217 Lan-Chr7 16857258 16865232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1217 1258 1375 RAD5 or RAD16-like Gene Family AT5G43530 39.669 1.37e-15 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan7g1217 SNF2_N 2.5e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1217 K10875 - gmx:100806733 896.345