Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1167 ATGGATTCGGATCAGGGGAAGCTTTTCATTGGTGGGATTTCATGGGACACTAACGAGGACAAACTTAAGGACTATTTCGGAAACTACGGTGTTGTCTCTCATGCTTCTGTTATGAGGGATAAGAACACAGGAAAACCTCGAGGTTTTGCCTTTGTTGTTTTTTCAGATCCATCTGTTGTTGATAGGGTTCTCGAAGATACTCATGTTATTGATGGAAGAACGGTTGATGCCAAGAGAGCCTTCTCAAGAGAGGATCAACAGATTTCTGTTAATTCTAGAACTGGTAATTCCAGCTCAGGTAGGAGTTCTGGAAATGGTGGAAATACCAGGACCAAAAAAATATTTGTTGGAGGGTTACCTCCCACCCTGACTGAAGAAACATTTCGTGAATACTTTGAGGCTTATGGCCAAGTAACTGATGTAGTAGTCATGTATGATCAGAATACTGGACGACCTCGAGGATTTGGGTTTATTTCTTTTGATAATGAAGACACAGTTGATAGAGTTTTGCACAAGACATTTCATGAATTAAATGGTAAAAATGTGGAGGTAAAACGTGCACTTCCCAAGGATGCTAATCCTGGTGCAAGTAACCACACGGGTGGTGCTGGAGTTGGCGGGTATCAAGGGTATGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGGGTGGATTCAAGTAGGTATGTGCAGCCTCAAAATACTGCAAGTGGATTCCCATCTTATGGTTCTTCTGGGTATAGTGCTCCTGGGTATGGGTATGGTGCGGCTAATAATGGCATTGGTTATGGTGCATATGGAGGATATAGTGGTGCCACTGCTGGGTATGGTGGGCCTGCTGGTGCATCATATGGGAACCCAAGTGTTCCTAATGCTGCTTATGGTGGTGGTCCTCCAGGTGGCCCGAGGAGTTCATGGTCTGGTCAGGTTCCCTCTGGTTATGGGTCTGCAGGTTATGGTGGTGCTGGAACTGGTAGTGGTGGCCCTGGTTCAGCAACTGCAGGTCAATCCCCGAGCGCAGTTGCTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGGTGGAAGTGATAGTTCTTATGGGAATCCAGGTGCTTATGGTGCTGTTGGAGGGCGATCTGGGAGTGCCCCAAATAGTGAGCTACAAGGCAGTGGTGGCAGCTATATGGGAGGTGGCTATAGCGATCCAAATGGAAATTCAGGGTACGGAAATGCAGCTTGGAGGTCTGAATCAACACAAGCATCAGGAAATTATGGGACTCCTCAGGGAAATGGTGCTCAAGGTGGTTATGGTGGGGGCTATGGCGGTGCACAGCCCCGACAAGCCCAACAACAATAG 1344 0.471 MDSDQGKLFIGGISWDTNEDKLKDYFGNYGVVSHASVMRDKNTGKPRGFAFVVFSDPSVVDRVLEDTHVIDGRTVDAKRAFSREDQQISVNSRTGNSSSGRSSGNGGNTRTKKIFVGGLPPTLTEETFREYFEAYGQVTDVVVMYDQNTGRPRGFGFISFDNEDTVDRVLHKTFHELNGKNVEVKRALPKDANPGASNHTGGAGVGGYQGYGASGGNQNAYDGRVDSSRYVQPQNTASGFPSYGSSGYSAPGYGYGAANNGIGYGAYGGYSGATAGYGGPAGASYGNPSVPNAAYGGGPPGGPRSSWSGQVPSGYGSAGYGGAGTGSGGPGSATAGQSPSAVAGYGNQGYGYGGYGGSDSSYGNPGAYGAVGGRSGSAPNSELQGSGGSYMGGGYSDPNGNSGYGNAAWRSESTQASGNYGTPQGNGAQGGYGGGYGGAQPRQAQQQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1167 447 MobiDBLite consensus disorder prediction 84 110 - -
Lan7g1167 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lan7g1167 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lan7g1167 447 MobiDBLite consensus disorder prediction 374 447 - -
Lan7g1167 447 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 445 - -
Lan7g1167 447 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Lan7g1167 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lan7g1167 447 MobiDBLite consensus disorder prediction 81 116 - -
Lan7g1167 447 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lan7g1167 447 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan7g1167 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 95 IPR000504 GO:0003723
Lan7g1167 447 MobiDBLite consensus disorder prediction 395 426 - -
Lan7g1167 447 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Lan7g1167 447 Gene3D - 107 228 IPR012677 -
Lan7g1167 447 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan7g1167 447 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lan7g1167 447 Gene3D - 4 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1167 Lan-Chr7 14440499 14443985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1167 8 205 Eukaryotic Initiation Factors Gene Family AT2G23350 23.116 5.54e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1167 K14411 - gmx:100811267 509.22