Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1146 ATGGCGGCATATTCCGCTGCAGAAGATGTAAAGTTTCCGAAAAAAGACGACGTCGTTTACTTTAACGGCCAACCTGTCCGCATGGCCGTCCCCTTAACGGTGATCCGCTCCGTCACAAGTAATGGCGGCGCTCGCGTCGTTGCACCGCCGTTGGTTGAAGTTAAGGAAGAGCCAAAAGAAGTAACCTATTCCGAAGTGGTAATGGAGACTAAGATGAAAGAGCCAAAATCAGAACAAGAGTGTTTTGAATTTAAAGACACGAAAACGACGTCGTTTGATCATTTTCTCAAGTTGACTAACACGAAAGTTATGTCACACGACGAGTGCTTAAAATCAATGGTTCATGTGAAAGAAGAACGAACCGAGTGTATTGAACCAGAAGAGAAGAAACCGGTTTTTTCCGAAGCGCGTGAGAAAGAAACGCCGTCGTTTTCAGAAGATTCTCTGAAATCAACTGCAGCACAAGGAGTTGATTCTGATGCCGTTGAATCTAAGAAGCGTGGTGATGAGGGAGTTGAAATTCTTAAGGTGAATCCTTTTGCCGGTTTGAATTTGAGGAGGCACTCAAAGGTGAAGGTGGCTGAGGTGAAGAAGGAGAAGGTAGAGGTGAAGATTCTAAATGTGGAGGATGGTGAGTTTCCGAGTGAGCCAGGGTGGTTATTGATAGGAAGGAAAGTGGAACTCGCGCTCGCTACTACAAAAGGAGTGAGGAAATTGGTTGACAATGAGATTGTTCACTTCAATTTCACCCTTCCATACAAGTCTAAATCACAGTGGATTGTTCGCATTTCAACCAAGCGCTCAGGAGAGGTTGGAAGGCTTCCTATGGAATGGGCAAACACGGTTGTTCCACTTGTGCAGTCTGGAAAGGTTAAGGTTCGAGCGAGATGCATATCTGCCCCTTACAGCCTGCAAATGATGCAAGAAATCATGTTGCTAGTAAGTTTTTACACTCACCAATCTATACTCACACAAAGTGTTGATACCTCTTGGAAGCTAGATGCTACAAACATTAACCCTAGCATTTATCCACTGCTTACACTGTTCAAAATGCTAGAGATTAAGCCCTCTCAGAAGGCTGATTTCGCCCCTGAGGATATTGATTTTAGGAAGCGCTTGCTTAATCCAAAGCTTGATCCTGATGAGGTTGCAGCATTACCTTTAATAAAGAGAAGAAAGGGTGGTGAGCAGCTATCAGAACAAAAAGATGATGATGAACAAGCTCTTTCAGAGTCTGCTTTGAATAAGCTTGTTGGAGCTGCAGAAATCTATGAGCTGGAGGAGAAAGATGGCCCAAGCACATTGACTTGTTGTCTGAAGCCTTACCAGAAACAAGCTCTCTATTGGATGTCAGAAATTGAGAAGGGAATGAATGTTGAGAGGGATGCAGAAAATCTTCATCCTTGCTGGTCAGCCTACAATATATGTGATGGAAGGACAATTTATGTGAACATCTTCACAGGGGAAGCCACAGCAAGATTTCCAAGAGCAACTCAGATGGCAAGAGGAGGAATTCTGGCAGATGCAATGGGACTTGGAAAAACTGTTATGACAATTGCTCTGATTCTTAGTAACCCAAGCAAGGGGAATGATACAGAGAATGAAACTGATAATCTTGCTACAAATAAGAGGAATGTGAACACCACAAACAGAGTGAATGGTGGCACTCTTATTGTTTGTCCCATGGCGTTGCTAGGTCAGTGGAAGGATGAGCTTGAAACACATTCAAAGGCGGGTAGTATAACAATATTCGTTCACTATGGTGGGGGTAGAACCAATAATCCCCAGTTGCTCTCAGAGCATGATGTTGTCTTAACTACATACGGGGTCCTACAATCTGAATTTAAAAGTGATGGAGTGAATAGCATTTATCACAGGGTCAATTGGTACAGGGTGGTGTTAGATGAAGCTCATCATATCAAAGGCCGTAAATTACAGATTTCCCAGGCTGCTTTTGCTTTGTCATCGCACTGCCGCTGGTGTCTAACTGGAACCCCTATTCAGAATAGTTTAGAAGATTTATTCAGTCTCTTGTGCTTCTTGCGTGTTGAGCCTTGGTGCAACTGGGCATGGTGGCATAAGTTGATTCAAAGGCCTCATGAGAATAATGATCCAAGGGCCCTGAAATTGGTGAAGGGTATTTTGAGGACTATAATGTTAAGAAGAACTAAGGAAACAAAGGACAAAGAAGGAAGGCCCATACTAGTTTTGCCACCAACTGATATTCAATTAATCGAGTGTGAACAGTCAGAATCTGAACGTGACTTCTATGATGCCCTCTTTATGAGATCTAAAGTTCAGTTTGATGAGTATGTTGAACAAAGAAAGGTTCTTAACCATTATGCCAATATCCTGGACTTACTGATGCAGTTGAGACGGTGTTGTAACCATCCATTTTTGGCTTTGTGTGGAAAAGATTCACAGAAATATGCTGACTTGGGCAGACTTGCACGAAGATTCCTTCAGTCTAACACTAATTCGTCCGACATGTGCATCCAAGAGGATCCACAGCAAAGTGCAGAGTTGAACAAACTGGCAACTAAATTCCTCCTGAAGACTGATTCTGCTCCAAATGCAGTCCAATCTCGTACATACATTGATGGTGTAATGGATAATATTCAAAATGGTGAAAACATAGAATGCCCTATATGTTTTGAGTCACCGGATGATCCTGTGTTTACACCATGTGCACATAGCTTGTGTAAAGAATGCTTATTCAATTTCTGGGGGACCTCAGTGGGTGGTAAATGTCCGATCTGTCGTCAAAAGCTCCAGAAAAGTGATCTGATCACCTGTCCATCTTTAAGCCCGTTTAAGGTTGATGTTGAGAACAATGTGACAGAGTCTTCAAAGGTTTCAAAGCTATTGGATTACTTGCAATCCATTGAGAGGTCACACTTTGGTGAAAAAAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTATTGGAGAATCCATTGAAAATTAGAGGTATTGCTTATTTAAGATTTGATGGGAAGTTGACTCAGAAACAGAGGGAGAAAGTTCTGAATGAATTTAATGAGACAAAAGAGAAGAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGTTTGAACTTAACTGCTGCCTCACATGTTTTTATTATGGACCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATCGGACAAAAACGTAGAGTTATTGTTCGAAGATTCATCGTCAAGGACACAGTGGAAGATCGTTTGCAACAAGTGCAAGCAAAGAAACAAAGAATGATATCTGGTGCCCTCACAGATGATGAGGTTCGGTCGTCAAGGATTCAAGACCTCAAAATGCTATTCACATGA 3357 0.4224 MAAYSAAEDVKFPKKDDVVYFNGQPVRMAVPLTVIRSVTSNGGARVVAPPLVEVKEEPKEVTYSEVVMETKMKEPKSEQECFEFKDTKTTSFDHFLKLTNTKVMSHDECLKSMVHVKEERTECIEPEEKKPVFSEAREKETPSFSEDSLKSTAAQGVDSDAVESKKRGDEGVEILKVNPFAGLNLRRHSKVKVAEVKKEKVEVKILNVEDGEFPSEPGWLLIGRKVELALATTKGVRKLVDNEIVHFNFTLPYKSKSQWIVRISTKRSGEVGRLPMEWANTVVPLVQSGKVKVRARCISAPYSLQMMQEIMLLVSFYTHQSILTQSVDTSWKLDATNINPSIYPLLTLFKMLEIKPSQKADFAPEDIDFRKRLLNPKLDPDEVAALPLIKRRKGGEQLSEQKDDDEQALSESALNKLVGAAEIYELEEKDGPSTLTCCLKPYQKQALYWMSEIEKGMNVERDAENLHPCWSAYNICDGRTIYVNIFTGEATARFPRATQMARGGILADAMGLGKTVMTIALILSNPSKGNDTENETDNLATNKRNVNTTNRVNGGTLIVCPMALLGQWKDELETHSKAGSITIFVHYGGGRTNNPQLLSEHDVVLTTYGVLQSEFKSDGVNSIYHRVNWYRVVLDEAHHIKGRKLQISQAAFALSSHCRWCLTGTPIQNSLEDLFSLLCFLRVEPWCNWAWWHKLIQRPHENNDPRALKLVKGILRTIMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFMRSKVQFDEYVEQRKVLNHYANILDLLMQLRRCCNHPFLALCGKDSQKYADLGRLARRFLQSNTNSSDMCIQEDPQQSAELNKLATKFLLKTDSAPNAVQSRTYIDGVMDNIQNGENIECPICFESPDDPVFTPCAHSLCKECLFNFWGTSVGGKCPICRQKLQKSDLITCPSLSPFKVDVENNVTESSKVSKLLDYLQSIERSHFGEKSIVFSQWTSFFDLLENPLKIRGIAYLRFDGKLTQKQREKVLNEFNETKEKRVLLMSLKAGGVGLNLTAASHVFIMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQAKKQRMISGALTDDEVRSSRIQDLKMLFT* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1146 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 722 IPR027417 -
Lan7g1146 1118 MobiDBLite consensus disorder prediction 127 145 - -
Lan7g1146 1118 Pfam HIRAN domain 231 312 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lan7g1146 1118 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 495 684 IPR014001 -
Lan7g1146 1118 Pfam Helicase conserved C-terminal domain 953 1065 IPR001650 -
Lan7g1146 1118 SMART helicmild6 982 1065 IPR001650 -
Lan7g1146 1118 Pfam SNF2-related domain 442 799 IPR000330 GO:0005524|GO:0140658
Lan7g1146 1118 Pfam Zinc finger, C3HC4 type (RING finger) 879 926 - -
Lan7g1146 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 873 929 IPR013083 -
Lan7g1146 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 1108 IPR027417 -
Lan7g1146 1118 SUPERFAMILY RING/U-box 876 931 - -
Lan7g1146 1118 CDD SF2_C_SNF 937 1076 - -
Lan7g1146 1118 MobiDBLite consensus disorder prediction 127 163 - -
Lan7g1146 1118 ProSiteProfiles Zinc finger RING-type profile. 881 921 IPR001841 -
Lan7g1146 1118 CDD DEXDc_SHPRH-like 439 722 - -
Lan7g1146 1118 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 954 1114 IPR001650 -
Lan7g1146 1118 SMART ultradead3 435 701 IPR014001 -
Lan7g1146 1118 Gene3D - 490 723 IPR038718 -
Lan7g1146 1118 SMART ring_2 881 920 IPR001841 -
Lan7g1146 1118 PANTHER DNA REPAIR PROTEIN RAD5B 360 1117 - -
Lan7g1146 1118 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 360 1117 - -
Lan7g1146 1118 SMART HIRAN_2 222 318 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lan7g1146 1118 Gene3D - 738 1118 IPR027417 -
Lan7g1146 1118 ProSitePatterns Zinc finger RING-type signature. 896 905 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1146 Lan-Chr7 13609437 13615391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1146 196 1117 RAD5 or RAD16-like Gene Family AT5G43530 62.781 0.0 1197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan7g1146 SNF2_N 1.9e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1146 K15505 - gmx:100806677 1423.3