Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1102 ATGCGATCCAAGTCTGAAACAAATCAAATAAGTTCGGGTCCACATTCCCTTCAACCGAGCAATGGTTATGCTGAACCTTGGTGGCATGGTATTGGGTACAATCCCATCACCCAAACAATGTCTCTGGCAAATACAACCAATTCATCCTCTCTTGATTGCCCTAATGCTGATTCAGAATCCAATGAAGACAGCCAGTCTTTGTCCAATAGTCGAGTGAATGTGGAGGATGATGGCGTTACTAAAGATTCCCAAATTGCTGCTCCTAATCAATCAGAAAATTATGGACAACATCGCCAAGGGGTGCAGCATACTTCAGCAGCCACACCTTTAATGCGTGAAGGCGGTCAAACTCAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATGCTATGGAGGTGTGGTGACAGCTTATGGACACCAGCAGTTGGGATATGCTCCTTTTATGGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCACAGGAGCCTGTTTATGTCAATGCTAAACAATACAAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAGGCAGAACTTGAAAGGAAGCTAATAAAAGCTAGAAAGCCATATCTTCATGAATCTCGTCATCAGCATGCTCTGAGAAGGGCAAGGGGTAGCGGGGGACGTTTTGCAAAGAAATCTGATGCGGGGGCCTCAGGCAAGGAAAAGGATACGGCTTCTGGTCCAGTCATGTCATCACAATCAGTCAGTTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCCGAAACCTGGAACTCTCCAACCATGCTGCAACAAGATGCAAGAGGATCAAATGCCCACAGCAGGTTTGGAGCACCCAATTATGAAAATGGGAGTGGCTCCTACCATAATCATAATGCTTTGCAATCTCCAACTTATCATATGCACTCGGGTGAGAGAGCGGAGGAAGGCGACTGCTCTGGTCAGCAAAGGGGAAGCATATCTTCTGAGCACGCCTCGCAGAGGCGTCTTGCTATACAGTAG 1047 0.469 MRSKSETNQISSGPHSLQPSNGYAEPWWHGIGYNPITQTMSLANTTNSSSLDCPNADSESNEDSQSLSNSRVNVEDDGVTKDSQIAAPNQSENYGQHRQGVQHTSAATPLMREGGQTQTPQLELVGHSIACATNPYQDPCYGGVVTAYGHQQLGYAPFMGMPHARMPLPLEMAQEPVYVNAKQYKGILRRRQARAKAELERKLIKARKPYLHESRHQHALRRARGSGGRFAKKSDAGASGKEKDTASGPVMSSQSVSSSGSEPLPSDSAETWNSPTMLQQDARGSNAHSRFGAPNYENGSGSYHNHNALQSPTYHMHSGERAEEGDCSGQQRGSISSEHASQRRLAIQ* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1102 348 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Lan7g1102 348 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Lan7g1102 348 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Lan7g1102 348 MobiDBLite consensus disorder prediction 44 77 - -
Lan7g1102 348 MobiDBLite consensus disorder prediction 246 314 - -
Lan7g1102 348 Gene3D - 173 235 - -
Lan7g1102 348 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Lan7g1102 348 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 30 339 - -
Lan7g1102 348 MobiDBLite consensus disorder prediction 208 348 - -
Lan7g1102 348 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Lan7g1102 348 MobiDBLite consensus disorder prediction 1 19 - -
Lan7g1102 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 339 IPR001289 GO:0003700|GO:0006355
Lan7g1102 348 MobiDBLite consensus disorder prediction 208 227 - -
Lan7g1102 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Lan7g1102 348 MobiDBLite consensus disorder prediction 1 26 - -
Lan7g1102 348 MobiDBLite consensus disorder prediction 329 348 - -
Lan7g1102 348 MobiDBLite consensus disorder prediction 44 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1102 Lan-Chr7 12370102 12374129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1102 15 274 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.256 5.47e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lan7g1102 CBFB_NFYA 4.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1102 K08064 - gmx:100808378 500.745