Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1092 ATGGCTTCCCATGTTACAAATTCTATCATTGGTCGGTATGTTTTGGCTATTGTGATTGCCATGGTAGTTTTCCTTCCAAACTTCACTTATGCCAAGAAATCCAAGATCATTGGTTTGAAAATGAATGTAATTGATAAATGTTGGAGATCAGATCCTGAATGGAGGAAGCATCGGCCACAACTTACTACATGTTCCATTGGCTATGTTGGAAAGATGACAAATAACATTGGTGAGGGCCTTATCCATTATAAAGTTACTGACCCAAGTGATGACCCTATAAACCCTAAATATGGCACCTTGAGGTATGGAGCATCTGTGATCCAAGGGAAAGTATGGATTACATTCCAAAGAGACATGGTCATTAGGTTAGTGAGACCACTTCTCATTAGTAGTTTCACTACCATTGATGGTCGAGGAGTTGATATCCACATTGCTCATAATGCATGCTTAATGATATTTAAGGCTACCAACATAATCATTCATGGCCTACGAATCCATCATTGCAAACCTCAAGCTCCTGGGATGGTGATGGGTTCTAATGGAAAGGTTATGCCTTTAGGTCAAGTAGATGGCGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTATAATTGCCAAGACGGTCTTCTTGATGTTACACGAGGTTCCACTGATGTGACTGTCTCCAACAATTGGTTCAGATTTCAAGACAAGGTTATGCTTCTGGGTCATGATGATGGATATATTAGAGATCAGAACATGAAGGTTACAGTGGTGTACAACCATTTTGGACCCAATTGTAACCAACGCATGCCTAGGATCCGCCATGGATATGCACACGTAGTTAATAATATGTACTTGGGATGGTTACAATATGCCATCGGTGGAAGCATGGAACCTAGTCTTAAAAGTGAAGCTAACCTCTTCATAGCACCACCGTCAGGGAGTAAGGAGGTTACATGGAGAAAAGGCAATCGTGCAAATGGGGATAAATGGGAATTCCATTCAGTGAAAGACATTTTTGAAAATGGAGCATCCTTCAAGACGACAAAAGGTGGATATGTGCGAAAGCCAAATTATACTAAGGACCAAGCTTTTAACGTTGCAGATGCCAAATCCGTGAGATCATTAATAAGTTCATCAGGTGCATTGCGATGCAGTAAAACCTCTATATGTTGA 1179 0.402 MASHVTNSIIGRYVLAIVIAMVVFLPNFTYAKKSKIIGLKMNVIDKCWRSDPEWRKHRPQLTTCSIGYVGKMTNNIGEGLIHYKVTDPSDDPINPKYGTLRYGASVIQGKVWITFQRDMVIRLVRPLLISSFTTIDGRGVDIHIAHNACLMIFKATNIIIHGLRIHHCKPQAPGMVMGSNGKVMPLGQVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTVSNNWFRFQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNMYLGWLQYAIGGSMEPSLKSEANLFIAPPSGSKEVTWRKGNRANGDKWEFHSVKDIFENGASFKTTKGGYVRKPNYTKDQAFNVADAKSVRSLISSSGALRCSKTSIC* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1092 392 Gene3D - 41 385 IPR012334 -
Lan7g1092 392 SUPERFAMILY Pectin lyase-like 82 351 IPR011050 -
Lan7g1092 392 Pfam Pectate lyase 130 309 IPR002022 -
Lan7g1092 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Lan7g1092 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Lan7g1092 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Lan7g1092 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Lan7g1092 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Lan7g1092 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Lan7g1092 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Lan7g1092 392 PANTHER PECTATE LYASE 3 389 - -
Lan7g1092 392 PANTHER PECTATE LYASE 18-RELATED 3 389 IPR045032 GO:0030570
Lan7g1092 392 SMART amb_all 118 315 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1092 Lan-Chr7 12186917 12188768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1092 72 324 Polysaccharide Lyase AT5G09280 70.356 2.86e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1092 K01728 - gmx:100780437 664.84