Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1077 ATGGTGGGATTGGAACTCATACCCATAGGCACAATCTTGGCTGTGCTAACAAATCAGGTGCTGAAAACAGCTAATGCAGCGGCCGATGTTCTTATTGGTAAAGAAAGTTTCAAGGTCCTTTCAAAACATCTGTTTGATATTGAGCCGGTGCTAAAGGAATTACAGCGTCAAGAATTGAATGAGTCTCAAGCTGCAAGGGTTGCCCTGGAGTCTCTTGAAGCAGATGTCAAAAAGGTGAATAACTTGGTCGAGAAGTATAGGAACCGTGGCCGTTTTTACTTGCTGGTTAAGTGCAGATCCATAGTGGAAGAGGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTAGCTGCACTTTCTATTGCAAATACCGAGGTCCTATCGAGAATTTCCGATCAGGTTAACAGGCTACAGAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAACAATGGACTTAGAGAACAGAAAGTAGATCAGGCTTTTGCGAATGACATACTTGAAGAGATAGCAAGGGCAGTTGGGGTGCCAATAGAATCGTCAGAGATAAGCAAAGAGTTGGCCAGCATTATGAGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAAAGAGCCGAGTTTATTTTCTTGGAGCAGATCATTGAGCTACTCTCTCGAGCTGATGCAGCAAGAGATTACGAAGAAGTTAAGAAACAATACTTCGAAAGGGTTCTGGTGATAGAGAGATATGATTCAAGGGAGAAGTGTATCCAACCACTGAATTCTTTCCTTTGTTGCATAACTGGAGCTGTTATGGTAGACCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCAGCCATTGAAGGTTGGTTTTATGATGGCAACGTGACTGACCCGGAAACAAACGAGGTTCTTGAAGATTTTACATTGAGGTCTAACATTCCACTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTAGAAATAAGGTCTATCAGGGAAAATCTATTATCAAATTCTGACTTATATGTGGAAGAATCCCTGAACCAAATTCAAGCTCTCACAGCAGAGAATTCTATTAACAAGGATTGGATTTCTATTGGAGGACTTACTGATATTATTATATATATCCTTGGGATCTCCGATAACAGAGATGTGAAGATGAATATTCTAATTACTTTGAAGGATGCTGTAGAGGGCCATGTAAGAAACAAGGAGAAAGTGGTTCAATCACTAGGATGGGATCAAATTATTTCTTGCTTAAGGAGTGACACTAGCATTTCAAAGGAAGCGATAGAATTGCTATATGAGTTGCTTCAACATCGATCTGGTTGGAATGAATGCTTCTGCAAAAAACTCTCTGAGAATAGCAATGCAGTTCTTTTTCTTGTCACCCTTCTCAAGGGTCCTGCTGCTAATTCGTCTTCAGCTGAGATTGCAGAAAAGATTTTGATGAAGCTTTTTGAAGTAAACGAGGACACCATTATAACTGCTGCTAATTTTGGCTGGTATAAACCACTTATTGATCATATGATTCAAGGACCGGATTCAAGAATACCAATTGCGAAAGCCATAGTTAATATGGAGTTGAATGATTTAAACTTGGAACTCGTTGGCAAGGAAGGAATTATTCATCCGTTGCTAGAAATGTTACCTGGAAATATTGAATCAAAAGAAGTGTCTTTATCAGCACTGGTTAAACTAGCAGGATGTGGTGCCAACAAGAGAATCATTGCCGCATCAGGAGGTGTTCCTATTATTCTAGATTTAATGTTCTCTCCTCGAATCCGAACATTCACTACTGTAAAATGCTCTGAAATCCTTGAGCAGCTTTCTTGTGACGAGGATGGAATTGATTTCTTCGTTGATGGTGAAGGGAAACAACTAGAGTTAGATTCCATTATCACCAACTTGCTAGCTCTACAGCAGTGGGCCAACTCAGGCAATGACTTCCGCAAGCCTGCTCTACGCGCTCTTCTTGGAATTTGCAAGTTTGAAAGCGGTTTAGTTAAGAAGGCAATACTAGCAGCAAATGGTGTATCTCTAATTCTTTCACTTCTTGATGATTCTGATTCAGAAATTCGCGATACAGCTATAAACCTTCTCTTTCTTTTCTCTCAGCACGAGCCAGAAGGGGTAGTTGAATACCTCCTCAGGCCTAGAAGGCTTGAAGCGTTGATTGGTTTTCTTGAGAATGACGACAACAATGATGTAAGGATGGCTGCTGCAGGTTTACTAGCTAACCTACCGAAATCAGAAAGAGAACTAACTGTGAAGTTGATTGAATTAGGAGGACTTGATGCAATCATAAGCATTTTGAAAACTGGCACAATGAAAGCGAAAGAAAATGCTCTTAGTGCACTCTTCAGGTTCACTGATCCTACATATATCGAGTCGCAGCGTGATTTGGTTAAACGCGGAATATACCCTTTGCTTGTAGATTTTCTCAATGACGGCTCAGTCACAGCAAAGGCAAGAGCAGCAGCATTCATCGGCGATCTCTCTATGAGCACTCCAAAGCTCACAGTTGTTTCCAAATCACCTGGCTGCTGGTTTTTCAAGTCATCAAGAGTTCATTTATGTTCAGCTCACGGTAGCGTATGCAGTGTGACTAACACATTCTGTCTATTAGAAGCAAATGCTTTGCCTGGTTTGGTAAAGCTGTTGAATGGTGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCCACATTGGTTTTGGAAGAGTTTCCTCAAAGGGGCGCTCACGTGTTGCACGACTCTAATGCAATAAGACCCTTATTAGACATTTTGAACTGGGGAACTGATTCTCTCAAGGCAGAAGCTTTAGGACTATTAGAGAAGGTGTTTGTATCAAAGGAAATGGTTGAATCCTATGGAACAACAGCTCGGTTACGCCTAGTTGGTATCACTGGTATGAATATATATGGTGATGGTCACCTTAGGAGAAAAGCTGCTAAGGTACTATCATTGCTCGAACGTTATTCAAGGTCATCATCAGCAGCAGTATCTGGAGTTTTGGAGTAA 3054 0.4113 MVGLELIPIGTILAVLTNQVLKTANAAADVLIGKESFKVLSKHLFDIEPVLKELQRQELNESQAARVALESLEADVKKVNNLVEKYRNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQLQIVDKLNNGLREQKVDQAFANDILEEIARAVGVPIESSEISKELASIMREKEEAANRKERAEFIFLEQIIELLSRADAARDYEEVKKQYFERVLVIERYDSREKCIQPLNSFLCCITGAVMVDPVSLCTGTTCERSAIEGWFYDGNVTDPETNEVLEDFTLRSNIPLRQSIEEWRELNYCLEIRSIRENLLSNSDLYVEESLNQIQALTAENSINKDWISIGGLTDIIIYILGISDNRDVKMNILITLKDAVEGHVRNKEKVVQSLGWDQIISCLRSDTSISKEAIELLYELLQHRSGWNECFCKKLSENSNAVLFLVTLLKGPAANSSSAEIAEKILMKLFEVNEDTIITAANFGWYKPLIDHMIQGPDSRIPIAKAIVNMELNDLNLELVGKEGIIHPLLEMLPGNIESKEVSLSALVKLAGCGANKRIIAASGGVPIILDLMFSPRIRTFTTVKCSEILEQLSCDEDGIDFFVDGEGKQLELDSIITNLLALQQWANSGNDFRKPALRALLGICKFESGLVKKAILAANGVSLILSLLDDSDSEIRDTAINLLFLFSQHEPEGVVEYLLRPRRLEALIGFLENDDNNDVRMAAAGLLANLPKSERELTVKLIELGGLDAIISILKTGTMKAKENALSALFRFTDPTYIESQRDLVKRGIYPLLVDFLNDGSVTAKARAAAFIGDLSMSTPKLTVVSKSPGCWFFKSSRVHLCSAHGSVCSVTNTFCLLEANALPGLVKLLNGEVHATAYEAIQTLSTLVLEEFPQRGAHVLHDSNAIRPLLDILNWGTDSLKAEALGLLEKVFVSKEMVESYGTTARLRLVGITGMNIYGDGHLRRKAAKVLSLLERYSRSSSAAVSGVLE* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1077 1017 Gene3D - 125 523 IPR011989 -
Lan7g1077 1017 SUPERFAMILY RING/U-box 248 329 - -
Lan7g1077 1017 Coils Coil 190 210 - -
Lan7g1077 1017 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lan7g1077 1017 SMART arm_5 538 577 IPR000225 GO:0005515
Lan7g1077 1017 SMART arm_5 876 916 IPR000225 GO:0005515
Lan7g1077 1017 SMART arm_5 920 960 IPR000225 GO:0005515
Lan7g1077 1017 SMART arm_5 674 714 IPR000225 GO:0005515
Lan7g1077 1017 SMART arm_5 760 800 IPR000225 GO:0005515
Lan7g1077 1017 SMART arm_5 578 616 IPR000225 GO:0005515
Lan7g1077 1017 SMART arm_5 408 447 IPR000225 GO:0005515
Lan7g1077 1017 SMART arm_5 716 758 IPR000225 GO:0005515
Lan7g1077 1017 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lan7g1077 1017 Coils Coil 127 154 - -
Lan7g1077 1017 Gene3D - 9 124 IPR036537 GO:0007166
Lan7g1077 1017 Coils Coil 62 89 - -
Lan7g1077 1017 Gene3D - 524 857 IPR011989 -
Lan7g1077 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 337 IPR013083 -
Lan7g1077 1017 SUPERFAMILY ARM repeat 335 670 IPR016024 -
Lan7g1077 1017 Gene3D - 863 984 IPR011989 -
Lan7g1077 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1013 - -
Lan7g1077 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1013 - -
Lan7g1077 1017 SUPERFAMILY ARM repeat 652 1001 IPR016024 -
Lan7g1077 1017 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1077 Lan-Chr7 11807552 11812824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1077 264 974 U-box Gene Family AT1G76390 25.722 9.92e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1077 - - gmx:100783638 1570.06