Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1072 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTACATTTATGATTATTTGGTAAAGAAAAAATTGCATAATACTGCCAAGGCATTCATGACAGAAGGGAAGGTTTCACCTGATCCTGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATCGTGAGGACGAATGACAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCTCAACATATTAAAGCGAAAGAACAGCAGCTGCAAATGCAGCAGTTGCAACTCATGCGACAAGCTCAGATGCAAAGAAGGGATTCTAATCACCCTCCCCTTGGTGGTCCTGTAAGTGCTATCACCGCAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTCTAGCTGCAAAAATGTATGAGGATCGGATGAAGCACTCTAACTCCATGGAGACAGAGACATCCCAACCTCTTGTAGATGCTAGAATAGCTCTTTTGAAATCAACAAATCATCCTGGGCAGATGGTTCAAGGAAATTCAGGGAGTGTAGCAGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAACAAACCCCCGAGATCAAAAGTGAAGTCAACATGGGCACCATGCAGAGATCCTTGCCTATGGATCCTTCTTCAATTTATGGGCATGGGGCAATGCAGTCAAAGTCTGGAATCTCAAATGCAGGATTAAACCCTGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCATCCTGGTTTTGGAGCACAAGTTCAAAAGCCTCTCCTTCAGAGTCCTAACCAATTTCAGGTTTTGCCACAACAACAGCAGCAGCATCTCCTCGCACAGGTTCAGGCGCAAGGCAATATTGGAAGTTCACCTATGTATGGAGATATGGATCCACAACGACTAAGGGGACTAGCGAGGGGAAGTTTGAATGTGAAAGATGGTCAACCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATACCACAGATGCAACAATCCACCTCCCAGCAACAAGATCCTCTGCATCCACAGCAACGTGTACAGAATAACCGAAAAAGGAGAGGGCCTACATCTTCGGGAGCTGCCAACAGTACTGGTACAGGAAATACACTTGGACCTTCTAATTCTCAACCATCAACTCCATCGACTCACACTCCTGGCGAAGGGGTTTCTATGGCGGGTAACTTGCCAAATGTTGCTGGTGTATCCAAAGGTTTGATAATGTATGGTACTGATGGGGCAGGTGGTCTTGCATCCTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTCGAATCATTTCTCTCACAGGACGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGAAACCCGTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCGTTCAGTGAAGTTGGTTCTATACGCAAGAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGTAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAGACAGAGATCACTCCTGTGGAGCACAATCTTATTATCACTGATGTTCGCTTTAGGCCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACCGTGCGGCTTTGGGATGCTGCAGCTCCAAGCTTTTCTTTGCAGGCATACACTGGTCATGCTGCACATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGATCTTTTCTGTTCTAGTGATGCTAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGCACTCGTGTTTCTAAGGGAGGATCTGCACAGGTGAGATTTCAGCCAAGGATCGGACACCTTTTGGCTGCTGCAGCTAGCAATGTTGTTTCTCTCTTTGATGTTGAAAGTGACAGGCAGATGCAATCATTACAGGGACACTCAACAGATGTTCACTCTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTATGAGTCAAGACTCTGTCAAAGTGTGGTCAGTTGCCTCTGGGGAATGCATTCATGAGCTTAGTTCCAGTGGCAACATGTTTCATTCTTGCGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCTGAGAACAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCAGCTCTAGCGCAGTCATCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTCAAGATTTGGAAATAA 2352 0.4464 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIVRTNDKHSETAAAYLEAQHIKAKEQQLQMQQLQLMRQAQMQRRDSNHPPLGGPVSAITAEGVLGQSTASALAAKMYEDRMKHSNSMETETSQPLVDARIALLKSTNHPGQMVQGNSGSVAAALQQIQARTQQTPEIKSEVNMGTMQRSLPMDPSSIYGHGAMQSKSGISNAGLNPGVGGLTLKGWPLTGIDQIHPGFGAQVQKPLLQSPNQFQVLPQQQQQHLLAQVQAQGNIGSSPMYGDMDPQRLRGLARGSLNVKDGQPIANDGSIGSPMQSTSSKINIPQMQQSTSQQQDPLHPQQRVQNNRKRRGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGEGVSMAGNLPNVAGVSKGLIMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTEITPVEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAAAPSFSLQAYTGHAAHVMSLDFHPKKNDLFCSSDANNEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHLLAAAASNVVSLFDVESDRQMQSLQGHSTDVHSVCWDTNGDYLASMSQDSVKVWSVASGECIHELSSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSSVTGMVASASHDKSVKIWK* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1072 783 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 783 - -
Lan7g1072 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 783 IPR044716 GO:0003714
Lan7g1072 783 Pfam LisH 10 36 IPR006594 GO:0005515
Lan7g1072 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Lan7g1072 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Lan7g1072 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Lan7g1072 783 Gene3D - 638 783 IPR015943 GO:0005515
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Lan7g1072 783 Pfam WD domain, G-beta repeat 753 783 IPR001680 GO:0005515
Lan7g1072 783 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Lan7g1072 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Lan7g1072 783 Pfam WD domain, G-beta repeat 584 620 IPR001680 GO:0005515
Lan7g1072 783 Pfam WD domain, G-beta repeat 546 576 IPR001680 GO:0005515
Lan7g1072 783 SMART Lish 8 40 IPR006594 GO:0005515
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 622 - -
Lan7g1072 783 Coils Coil 86 106 - -
Lan7g1072 783 MobiDBLite consensus disorder prediction 331 408 - -
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Lan7g1072 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 709 IPR001680 GO:0005515
Lan7g1072 783 CDD WD40 498 783 - -
Lan7g1072 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Lan7g1072 783 SMART WD40_4 623 659 IPR001680 GO:0005515
Lan7g1072 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Lan7g1072 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Lan7g1072 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Lan7g1072 783 SMART WD40_4 495 534 IPR001680 GO:0005515
Lan7g1072 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Lan7g1072 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Lan7g1072 783 Gene3D - 484 637 IPR015943 GO:0005515
Lan7g1072 783 SUPERFAMILY WD40 repeat-like 496 783 IPR036322 GO:0005515
Lan7g1072 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Lan7g1072 783 MobiDBLite consensus disorder prediction 320 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1072 Lan-Chr7 11536950 11548480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1072 581 782 Miscellaneous Gene Families AT5G08390 25.121 5.16e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan7g1072 WD40 0.037 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1072 - - gmx:100797756 1371.68