Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan7g1065 | ATGGCGAGAAAGGAAGAGAATCGAATATTCGTCGGAGGTTTATCTTCAGATGTTTCGGAGCGTCAGCTCCACCGTGCTTTCGATCGTTACGGCAAGATCCTTGAATGTCAGATAATGGTTGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACCTTTGCTGACCGTCGGGGAATGGAAGATGCAATGAAGGAAATGCATGGACGGGAGCTGGGTGATCGTGCTATCTCTGTCAATAAGGCCCAGCCAAAAATGGGGTCTGATGATGCAGACCATGGTTACAGAAGTAGCTACTCATCTGGTGGTCGGGGAAACTATAGGGTGGGAGACAGTACAGGACAGGATGACTGCTTCAAATGTGGGCGTCCCGGGCATTGGGCCCGAGATTGCCCTACGGCAGGTGGTGGTCGGGGTGGCGGTGGCTCATTTTCTTCACGTCCTAGGTTTGGAGCTGCTGGTGGCCACGGGGATCGCCTGAGTAATGAACGTGATCGCTATGCTGATGATCGTTATGATGGAAGGCGTTATGGAGATGGGGATCGGTATGATGACCGTTATGGCAGCCATGATCGCCAACCCAGTGACAGGTATCCAACAAATGGAGATCGTTTTGGAAGTGGTAGAAATGGCGGTTCAGATCGTTACCCACAAAATGGTCAGGGCAAAGATAGAGGTTACGATCGGCTAGGTGGTCCACGTGGAGCTGCCGCCGATAGATATGGAGGTGGAGTGCCAGCAAGAGATGAAGGAAGGAATTATAGGAGCAGCAGGCCTGGTCCATATGATCGCCCCAGTAGGGGTGCTCCTCCATCTTCATTTGATCGTTACTGA | 837 | 0.5161 | MARKEENRIFVGGLSSDVSERQLHRAFDRYGKILECQIMVERDTGRPRGFGFITFADRRGMEDAMKEMHGRELGDRAISVNKAQPKMGSDDADHGYRSSYSSGGRGNYRVGDSTGQDDCFKCGRPGHWARDCPTAGGGRGGGGSFSSRPRFGAAGGHGDRLSNERDRYADDRYDGRRYGDGDRYDDRYGSHDRQPSDRYPTNGDRFGSGRNGGSDRYPQNGQGKDRGYDRLGGPRGAAADRYGGGVPARDEGRNYRSSRPGPYDRPSRGAPPSSFDRY* | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan7g1065 | 278 | MobiDBLite | consensus disorder prediction | 81 | 110 | - | - | |
| Lan7g1065 | 278 | MobiDBLite | consensus disorder prediction | 159 | 199 | - | - | |
| Lan7g1065 | 278 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 109 | IPR035979 | GO:0003676 | |
| Lan7g1065 | 278 | ProSiteProfiles | Zinc finger CCHC-type profile. | 119 | 133 | IPR001878 | GO:0003676|GO:0008270 | |
| Lan7g1065 | 278 | MobiDBLite | consensus disorder prediction | 133 | 278 | - | - | |
| Lan7g1065 | 278 | SUPERFAMILY | Retrovirus zinc finger-like domains | 103 | 139 | IPR036875 | GO:0003676|GO:0008270 | |
| Lan7g1065 | 278 | Pfam | Zinc knuckle | 119 | 133 | IPR001878 | GO:0003676|GO:0008270 | |
| Lan7g1065 | 278 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 78 | IPR000504 | GO:0003723 | |
| Lan7g1065 | 278 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE | 1 | 232 | - | - | |
| Lan7g1065 | 278 | PANTHER | TRANSFORMER-2-RELATED | 1 | 232 | - | - | |
| Lan7g1065 | 278 | Gene3D | - | 117 | 157 | - | - | |
| Lan7g1065 | 278 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
| Lan7g1065 | 278 | Gene3D | - | 1 | 116 | IPR012677 | - | |
| Lan7g1065 | 278 | SMART | c2hcfinal6 | 118 | 134 | IPR001878 | GO:0003676|GO:0008270 | |
| Lan7g1065 | 278 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan7g1065 | Lan-Chr7 | 11445665 | 11448069 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan7g1065 | 9 | 88 | C2H2 Transcription Factor Family | AT2G19380 | 38.750 | 8.17e-12 | 63.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan7g1065 | - | - | gmx:100809519 | 386.341 |