Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1027 ATGAGAAGAAGGGGTAGAGAGCTTCTTAGCCTCTCTTTTTCTCTATACTCACCAACAAAGAATCATTACCCATTTCCAAAGCTACCATCAACTTTTACTTTCTCAACTTCTTCCTCCTCCTCCAATACACCACCACCATCATCATCATCCAAGTCAAGGGACTCAATGCTTTTGGAAAAGTTTAAACAAAGAAAACTCAAAGGCACTTCAAATGACACAGGTTCACATGCATCAACTACTTCCAACGCCATTCATGAGAAGAATGTGGCTGAAAAGGGTCAAAATGAACCAACTATGGTGGTTTCTGGTTTTAAGGAGTTGGGTTTGAATGAGGAGCTTGTTGAGGTGTTGGAAGGGATTGGTGATTTTGTTCCTAGTGAGATACAGTGTGTGGCTATTCCAACTATTTTGGAAGGGAAATGTGTTTTGTTAAGTTCACCTTCTGGACCTGACAAGACTTTGGCTTTCTTATTGCCCCTTATTCAGCTGCTGAGACGGGATTTGCTTGGTTCGAATTCAAATCACCCCCGAGGCATTGTGCTTTGTACTACAGAGGAGAAAGCTGAAGAGTGCTTTAATGCTGCAAAATATATCATCCATAATTCAGAATTGAAATCTGCAAAGGGTTCTGTTCCGCGGTCAAATACTTCAATTGGTCTCATAATTGGAACTCCTAATGAGATTCTACAATACATTGAAGAGGGTAGTGTTGTTCCTGCGGAGTTAAGATACTTGGTAGTGGATGATGTGGATTACATGCTTGGTAGTGGACTTGGTCCCGAAATCCACAAAATTCTCACACCATTACTAGATCCTGAATCAAAATCTAATGTCAAAAGATTGCAGACAATTTTGGCAACTTCCACTATAACTGAGGTTTTGGGTGAACAATCACCCATTGTAAAGGACCTCGAGCATGATCATGCCGGAAATATATCTGCATTGTCTTTAGAAATGGATCAAACAGAAGTCTTTCATTTTATAGAGTCTCTGGATTCTCTTAGGGGAAAAGTGGCAGAGGCCATGGGTTCCCTTTTGAAATGA 1044 0.4061 MRRRGRELLSLSFSLYSPTKNHYPFPKLPSTFTFSTSSSSSNTPPPSSSSKSRDSMLLEKFKQRKLKGTSNDTGSHASTTSNAIHEKNVAEKGQNEPTMVVSGFKELGLNEELVEVLEGIGDFVPSEIQCVAIPTILEGKCVLLSSPSGPDKTLAFLLPLIQLLRRDLLGSNSNHPRGIVLCTTEEKAEECFNAAKYIIHNSELKSAKGSVPRSNTSIGLIIGTPNEILQYIEEGSVVPAELRYLVVDDVDYMLGSGLGPEIHKILTPLLDPESKSNVKRLQTILATSTITEVLGEQSPIVKDLEHDHAGNISALSLEMDQTEVFHFIESLDSLRGKVAEAMGSLLK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1027 347 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 262 347 IPR002004 GO:0003723
Lan7g1027 347 Gene3D - 297 346 - -
Lan7g1027 347 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
Lan7g1027 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 293 IPR027417 -
Lan7g1027 347 MobiDBLite consensus disorder prediction 33 97 - -
Lan7g1027 347 MobiDBLite consensus disorder prediction 70 88 - -
Lan7g1027 347 SMART ultradead3 121 307 IPR014001 -
Lan7g1027 347 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 292 IPR014001 -
Lan7g1027 347 Gene3D - 48 296 IPR027417 -
Lan7g1027 347 SUPERFAMILY PABC (PABP) domain 291 343 IPR036053 GO:0003723
Lan7g1027 347 Pfam Poly-adenylate binding protein, unique domain 294 342 IPR002004 GO:0003723
Lan7g1027 347 MobiDBLite consensus disorder prediction 55 69 - -
Lan7g1027 347 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 347 - -
Lan7g1027 347 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 347 - -
Lan7g1027 347 MobiDBLite consensus disorder prediction 33 54 - -
Lan7g1027 347 Pfam DEAD/DEAH box helicase 127 291 IPR011545 GO:0003676|GO:0005524
Lan7g1027 347 SMART poly_2 286 347 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1027 Lan-Chr7 10780640 10783246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1027 102 319 Eukaryotic Initiation Factors Gene Family AT5G11200 24.242 2.34e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1027 - - gmx:100800575 397.512