Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1026 ATGGCAGGAAGAACCATTTTCACTCTCTCATTCTCTTCTTCCAACTTCTCTTCCTTCACACGCCTTTCTCACCATGTCAACCTCACACTCTCCAAACCCATCATCAGGTTCTTCCCACGCTTCAGGCCTCTCTGTTCCATCGCCACCGCCGCACCGGAAACCGCAGACCTCATGAAACACTCCATGCTCCTCGAGAAGCTTAGAATCAGGCACCACAAGGACAAGCTTAAACCCCCAGAACCCAAAAAGAAGAGTCTTTCTTCAAACAAGGATTCTTCTGGTGAGATAAAGAAGAAATCTTTTGAGGAGAAGGAGAAGTTGATTGGGAGTTTTGAGGAGTTGGGTTTGAATGATGAGGTTATGGGATCTGTTAGAGAAATGGGTATTGAAGTTCCAACTGAGATACAGTGTATTGGTGTACCTGCTGTGTTGCAAGAGATGAGTGTTGTGTTGGGTTCTCATACTGGTTCTGGAAAAACTCTTGCTTACTTGCTTCCTATTGTTCAGCTTCTAAGACGGGATGAACAATTGAATGGAATGGTTTTGAAGCCTAGGCGTCCCCGAGCTGTTGTTTTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCACGATTCAGGTGTACCATGGTTAGTGGTGGTGGCCGTCTTAGACCCCAAGAGGATTCACTGAATAATCCCATAGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACACATCGAGGAGGGAAACATGGTATATGGTGACCTCAAATACTTAGTGTTGGATGAGGCAGACACAATGTTTGATAGGGGCTTTGGTCCTGATATACGCAAATTTCTGGGCCCATTAAAGCGCCGTGAATCAAAATCTGATGGTCCAGGTTTTCAGACTGTCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAACACTTGTTGATGAGGAGTTTCAAGGCATTGTACATCTGCGCACATCGACGTTGCATAAAAAGATTTCTTCGGCTCGTCACGACTTTATTAAACTTTCAGGTTCTGAGAACAAGCTGGAAGCTTTGCTTCAGGTACTTGAGCCAAGCCTGGCAAAGGGGCACAGGGTTATGGTTTTCTGCAATACATTGGATTCAAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCAGATTTCTACTGTCAACTACCATGGAGAGGTACCGGCAGAGCAAAGGGTTGAAAACCTGAAAAAGTTTAAGAGTAATGATGGAGATTGCCCTACATTAGTTTGCACAGATTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTTATGTTTGACTTCCCGAAGAATTCTATCGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACAAGTTTGATTGCTAGAAGGGACACTATCTTGGCCACCAGAATAGAGGAGGCACTGAGGAAGAATGAGAGTTTGGAGGCTATCACTTCAGAAAGTGTCCGAAAGGACGTTACTAGGACTCAAATCACTGAGAAGAGAGGAAGGAACAAAAATTTCGTTAGCGTTGCAAAGGTTAAGAAGAATTCTGCTGGTCGCCCTAGTTCAGCAAATGAGTCCGGTACGAAATCCAGAAAAGGATCACCATCAGCAAAACCTATGAAGAAAGGAATTAATGTTTCAAAGCCTATAAAATCTTCCAGTGCAAGTAGCTCTAGAAAAGCTTCTTCAGGGAATAAGCAAACAAGTAAAAGGGCCAATGCCACCAACAACCAACAACAACAATCAAGGCCTTTTGCTGTTAGGACTTCTAAACCCAGTGCCTCCAAATCTTCAGATTCTAAACTCAGTGTTGTGGGATTTAGGGGGAGGAATTCATCATCAAATAATACACAATCACTCTAG 1905 0.4415 MAGRTIFTLSFSSSNFSSFTRLSHHVNLTLSKPIIRFFPRFRPLCSIATAAPETADLMKHSMLLEKLRIRHHKDKLKPPEPKKKSLSSNKDSSGEIKKKSFEEKEKLIGSFEELGLNDEVMGSVREMGIEVPTEIQCIGVPAVLQEMSVVLGSHTGSGKTLAYLLPIVQLLRRDEQLNGMVLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDLKYLVLDEADTMFDRGFGPDIRKFLGPLKRRESKSDGPGFQTVLVTATMTKAVQTLVDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGHRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLKKFKSNDGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLIARRDTILATRIEEALRKNESLEAITSESVRKDVTRTQITEKRGRNKNFVSVAKVKKNSAGRPSSANESGTKSRKGSPSAKPMKKGINVSKPIKSSSASSSRKASSGNKQTSKRANATNNQQQQSRPFAVRTSKPSASKSSDSKLSVVGFRGRNSSSNNTQSL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1026 634 SMART helicmild6 381 463 IPR001650 -
Lan7g1026 634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 502 IPR001650 -
Lan7g1026 634 Gene3D - 336 595 IPR027417 -
Lan7g1026 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 480 IPR027417 -
Lan7g1026 634 MobiDBLite consensus disorder prediction 529 547 - -
Lan7g1026 634 Gene3D - 71 328 IPR027417 -
Lan7g1026 634 SMART ultradead3 128 347 IPR014001 -
Lan7g1026 634 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Lan7g1026 634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 327 IPR014001 -
Lan7g1026 634 MobiDBLite consensus disorder prediction 561 634 - -
Lan7g1026 634 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 35 539 - -
Lan7g1026 634 MobiDBLite consensus disorder prediction 70 98 - -
Lan7g1026 634 Pfam Helicase conserved C-terminal domain 352 463 IPR001650 -
Lan7g1026 634 MobiDBLite consensus disorder prediction 79 98 - -
Lan7g1026 634 MobiDBLite consensus disorder prediction 512 634 - -
Lan7g1026 634 CDD SF2_C_DEAD 340 472 - -
Lan7g1026 634 Pfam DEAD/DEAH box helicase 133 315 IPR011545 GO:0003676|GO:0005524
Lan7g1026 634 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 35 539 - -
Lan7g1026 634 CDD DEADc 120 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1026 Lan-Chr7 10766546 10773876 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1026 108 485 Eukaryotic Initiation Factors Gene Family AT3G19760 27.749 1.86e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1026 - - vun:114182370 848.195