Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g1023 ATGTGCTTAGAAACTGTGGCGCACCATGGTGATGATGAACACGATGGTGTAAGTTCTAGAACATCTGGGTCACAAGGAATGAACCAAGTGATGGAGCAAGAAGAGGTTACAATGCTAGATTCTTCCGTGGTTTCAACTCTGACTAATGTTGTGTCCGGGTCAAGACATGGAGGCAGTGAATGGGTCCAGGTCCAGGGAAGTGGTGGTTCTCCTTTGATGTCTGGTTTTGGACATGCATCTCCTTCATCTCCTTCTACTTTGTCTTCTTTCCCTTCTCGTTCTGCTTTGGTTTCTGGGTCATGGGTTGGGAACAAAAGAAGGCGTGATGAAGAGAGTGGTGCTCCTCATCAGTTTATGCAACAAGATGATCCTAGACACTTCAGAACCATTGGTGACTTCAGGGTACCCAAACAAGGAGAGTCATCATCAGAAGCTGCATCCACCACCACCACTGCAATCACGGTGACTGTCACCACGCTGGCGACACCATCGACCGAAACAGCTTCAAACGAAGAAACCATAGAGAGGAGAAGGTACAGGGGAGTGAGGCAAAGGCCATGGGGAAAATGGGCAGCAGAAATTCGAGATCCACACAAAGCAACAAGAGTTTGGCTTGGCACATTTAACACAGCAGAAGCAGCAGCAAGAGCTTATGATGAAGCTGCATTAAGGTTCAGAGGCAACAAAGCAAAGCTAAATTTCCCTGAAAATGTTAGAGCATTGCCACCACCACCAATTCACACTTTTCCAGCCACCACAATGCTGGCAGCCACCCTCTCTGACTCCTCTGACATTCTCCGGCAGCCCTCAGCCGCAACCATGACACCGCCGCAATTTCAGCAGCAGCCATTACTCCAGGGGTCCTCTGATATGATCAGAGACTATTGGGAATATTCACAGTTTCTTCAAAGTTCTGGTGGTTTTCAACAACAATTACAACTACAGCAACAACAACCTTCTAGTTTGTTTCAGCAGTTGTACTATAACTCACAATTGGGTGCCCTTCAATCATCTTTATTGTTATCATCTTCACCTTCTTTGTCTTCTTCTATGTCAGCAACTGCATCATTTTCACCACCTACTCAATTTTCTTCTGCTTCATGTCCCATGTTTTCTAGTCAACAAATGGGCTATTTCGGGCCACCGGGAAACCAAACTCAAGGTGGCGGCGTCACGAGATCGGTGTTTCCACCGCCTACTTGGTCAGATAACAGTGGCCATCAGCCACCTCCTAGTTAA 1239 0.4697 MCLETVAHHGDDEHDGVSSRTSGSQGMNQVMEQEEVTMLDSSVVSTLTNVVSGSRHGGSEWVQVQGSGGSPLMSGFGHASPSSPSTLSSFPSRSALVSGSWVGNKRRRDEESGAPHQFMQQDDPRHFRTIGDFRVPKQGESSSEAASTTTTAITVTVTTLATPSTETASNEETIERRRYRGVRQRPWGKWAAEIRDPHKATRVWLGTFNTAEAAARAYDEAALRFRGNKAKLNFPENVRALPPPPIHTFPATTMLAATLSDSSDILRQPSAATMTPPQFQQQPLLQGSSDMIRDYWEYSQFLQSSGGFQQQLQLQQQQPSSLFQQLYYNSQLGALQSSLLLSSSPSLSSSMSATASFSPPTQFSSASCPMFSSQQMGYFGPPGNQTQGGGVTRSVFPPPTWSDNSGHQPPPS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g1023 412 PANTHER DNA-BINDING DOMAIN 39 375 IPR044808 GO:0003700|GO:0009873
Lan7g1023 412 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 39 375 - -
Lan7g1023 412 MobiDBLite consensus disorder prediction 103 126 - -
Lan7g1023 412 CDD AP2 186 237 IPR001471 GO:0003700|GO:0006355
Lan7g1023 412 Gene3D AP2/ERF domain 177 237 IPR036955 GO:0003700|GO:0006355
Lan7g1023 412 Pfam AP2 domain 178 227 IPR001471 GO:0003700|GO:0006355
Lan7g1023 412 ProSiteProfiles AP2/ERF domain profile. 178 235 IPR001471 GO:0003700|GO:0006355
Lan7g1023 412 MobiDBLite consensus disorder prediction 1 18 - -
Lan7g1023 412 MobiDBLite consensus disorder prediction 376 402 - -
Lan7g1023 412 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Lan7g1023 412 PRINTS Ethylene responsive element binding protein signature 201 217 IPR001471 GO:0003700|GO:0006355
Lan7g1023 412 SMART rav1_2 178 241 IPR001471 GO:0003700|GO:0006355
Lan7g1023 412 MobiDBLite consensus disorder prediction 98 126 - -
Lan7g1023 412 MobiDBLite consensus disorder prediction 1 27 - -
Lan7g1023 412 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677
Lan7g1023 412 MobiDBLite consensus disorder prediction 376 412 - -
Lan7g1023 412 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g1023 Lan-Chr7 10715172 10717364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g1023 167 239 AP2-EREBP Transcription Factor Family AT5G61890 73.973 1.29e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan7g1023 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g1023 - - gmx:100804843 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1023 7 10715172 10717364 Lan8g1065 8 13377645 13380767 LSH
Lan7g1023 7 10715172 10717364 Lan8g0755 8 9743133 9744947 PCT
Lan8g0755 8 9743133 9744947 Lan7g1023 7 10715172 10717364 PCT