Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0998 ATGGCAGATCTTGTTAGCCACGGGAATGCTGACCGTGACATAGAGCAGGCATTGATTGCTTTGAAAAGGGGTGCTCAATTGCTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGCCCATTTAAACTTTCCAGTGATGAGTCATCTTTAATCTGGATTTCTAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTCTCAAAAATTATTCCTGGTCAAAGAACAGCTGTTTTCAAACGCTATCTGCGTCCCGAGAAGGACTATTTGTCTTTTTCACTTATTTATAATAACGGAAAGCAATCCCTTGATTTGATTTGCAAAGATAAAGCTGAGGCAGAAGCGTGGACTGCCGGTCTCAAAGCACTAATATCTTCTGGTCAAGGTGGTAGGTCCAAAATTGATGGATGGAGTGATGGAGCCCTCAATCTTGATGACAACAGAGACTTGAGTCCAAGCGAAAGTCCAGCCAGGGCATCACGAGATGCCAGTTCTCCCGACATTTCTGTGAGTCTTCCAAATACTTCACTAAAGTCCTTTAAGCCTGACACCACCATAAATTTAGAAAGGTCACATGCACCTTCAGACCCAACAAACATGCAAGTAAAAGGATCTGGTTCAGATGCTCTTCGTGTCAGTGTTTCAAGTGCCCCAAGCACATCCAGTCATGGATCTGCGCCAGATGATTATGATGCCCTGGGGGTTGTGTACATATGGGGGGAGGTTATCTGTGAAAATGTTGTGAAAGTTGGTGCTAATAAAAGTGTCAATTTTTCCAGCCCGAGGGCAGATGTTCTTCTCCCCAGACAATTGGAATCTGATGTAGTTTTAGATGTATATCATATAGCATGTGGTGTTAGACATGCCTCTCTAGTGACTAGACAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGGCGCCTTGGCCATGGTTTTAGGAAGAATGTGGTTCAACCTCGTCTAGTTGAGGCATTGGCTTCTACATCTGTTGATTTTGTTGCATGTGGGGAGTTCCATTCCTGTGCTGTTACGACGGCTGGGGATCTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATATTAGTCATTGGATACCGAAGAGAATTGCAGGTCCATTAGAGGGACTTCAAGTTGCTTTTGTCAGTTGTGGTCCTTGGCACACAGCCTTGATAACTTCTAATGGGCAACTCTTTACATTTGGTGATGGAACATTTGGTGCCTTAGGCCATGGAGATAGGGAAAATGTTTCGTATCCTAGAGAAGTAGAATCCTTATTAGGATTAAGGACAATAGCTGCTGCATGTGGAGTGTGGCATACTGCGGCTGTTGTAGAGATTATTGTGACACAATCTAGTGCGAGTGTATCATCAGGTAAATTATTTACTTGGGGTGATGGAGACAAAGGCCGCCTCGGACATGGGGACAAGGAGGCACGGCTTAAACCAACTTGCGTGTCTGCGCTTATTGATTACAATTTTCATAAAGTTGCTAGTGGGCACAGTTTGACAGTTAGCCTGACAACATCTGGACGTGTTTTCACAATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCTCACTCTGATGGCAAGCTTCCCTGCTTGGTTGAAGATAAAATTGCTGGGGAATACATTGAAGAAATTGCATGTGGTGCATATCACGTTGGAGTTTTAACATCTAGAAATGAAGTTTATACATGGGGGAAGGGTGCGAACGGAAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCGTTGAAGGATAAACATGTGAAATATATTGCATGTGTTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGCATCAGGTACTGAGCAGTCTCAGTGCTCCGCTTGTAGACAGGCATTTGGCTTCACTAGAAAGAAGCACAATTGCTATAATTGTGGACTTGTGCACTGCCATCCATGTAGTTCAAGGAAAGCACTCAGAGCAGCCTTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCTGAAGCTAGCAATAATAATCGGAGGAATGCTTTGCCTCGTCTTTCTGGTGAAAACAAGGACAGGTTAGACAAGTCCGAGGTAAGATTTTCGAAGTCAGTGGTTCCTTCTAATGTGGATTTGATAAAGCAACTAGATATTAAGGCGGCCAAACAAGGAAAGAAAGCTGATACATTCTCACTGGTTCGCACCTCACAAGCACCTTCTTTGCTACAGCTGAAAGATCTTGTCTTGTCTACTGCTATCGATATGAAACGAACAGTTCCAAGACCAGTTGTTGCACCATCTGGAATAAGTTCCAGGTCTGTGTCTCCTTTCTCTAGGGGAACAAGCCCCCCTCGTTCTGTTACGCCATTTCCAACAACATCGGGACTTTCCTTCTCCAAAAGTATTGCTGATAATTTGATAAAGACAAATGAACTTTTAAATCAAGAAGTGCAGACGTTACGTGCACAGGTCGAGAGACTGAAACAGAGATGTGAACAGCAAGAATTAGAGCTCCAAAGGTCATCAAAAAAGACTCAACAAGCTATGGCACTGGCTGCTGATGAATCTGCAAAATGTAATGCTGCAAAAGAAATTATGAAGCCACTTACATCACAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCCGGAGTCTATGATGCAGAGAACATGAGACCTGCTTACCTACCAAATGGTTTTGAGTCAAATGGCATCCACTATCCGGACTCAAACGGAGAGCAACACTCCAGGGCTGAGTCAATTAGTAGCTCTAGTTCCGCCTCCATAGGAGTTGAATCCACTCTGTTGAATAGAACTGAGGGGAATTTGCCAGGAACCTATGGAACTAATTGGGGCCTTGATAATCAATCAGACAATTATCCAGATGTTAAATTGCCAAATGTCGGCGGTGTGCTTCAGGCAAGCAGCAGTAGCATGTCAGATACCGTTGATGGTAGGGATTCTGGGCATTTCCATGATAATGGCAGCAGTCTGAGATCGACAAATACTGCACAGGCTGGTAATAGTGATCAAGTTGAAGCAGAATGGATTGAACAATATGAACTTGGTGTTTATATAACACTTGTGGCCCTGCATGATGGAACAAGAGATCTGAAGCGAGTACGCTTTAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGTCTTGGTGGTCAGAGAACCGGGAGAAGGTATACGAAAAGTACAATGTTCATAGCACAGACAAGTCTTCTGGCCGGCTAAGCGATACTTAG 3303 0.4393 MADLVSHGNADRDIEQALIALKRGAQLLKYGRKGKPKFCPFKLSSDESSLIWISSSGERSLKLSSVSKIIPGQRTAVFKRYLRPEKDYLSFSLIYNNGKQSLDLICKDKAEAEAWTAGLKALISSGQGGRSKIDGWSDGALNLDDNRDLSPSESPARASRDASSPDISVSLPNTSLKSFKPDTTINLERSHAPSDPTNMQVKGSGSDALRVSVSSAPSTSSHGSAPDDYDALGVVYIWGEVICENVVKVGANKSVNFSSPRADVLLPRQLESDVVLDVYHIACGVRHASLVTRQGEVFTWGEESGGRLGHGFRKNVVQPRLVEALASTSVDFVACGEFHSCAVTTAGDLYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVAFVSCGPWHTALITSNGQLFTFGDGTFGALGHGDRENVSYPREVESLLGLRTIAAACGVWHTAAVVEIIVTQSSASVSSGKLFTWGDGDKGRLGHGDKEARLKPTCVSALIDYNFHKVASGHSLTVSLTTSGRVFTMGSTVYGQLGNPHSDGKLPCLVEDKIAGEYIEEIACGAYHVGVLTSRNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDKHVKYIACVSNYSAAICLHKWASGTEQSQCSACRQAFGFTRKKHNCYNCGLVHCHPCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNNNRRNALPRLSGENKDRLDKSEVRFSKSVVPSNVDLIKQLDIKAAKQGKKADTFSLVRTSQAPSLLQLKDLVLSTAIDMKRTVPRPVVAPSGISSRSVSPFSRGTSPPRSVTPFPTTSGLSFSKSIADNLIKTNELLNQEVQTLRAQVERLKQRCEQQELELQRSSKKTQQAMALAADESAKCNAAKEIMKPLTSQLKDLAEKLPPGVYDAENMRPAYLPNGFESNGIHYPDSNGEQHSRAESISSSSSASIGVESTLLNRTEGNLPGTYGTNWGLDNQSDNYPDVKLPNVGGVLQASSSSMSDTVDGRDSGHFHDNGSSLRSTNTAQAGNSDQVEAEWIEQYELGVYITLVALHDGTRDLKRVRFSRRRFGEHQAESWWSENREKVYEKYNVHSTDKSSGRLSDT* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0998 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Lan7g0998 1100 MobiDBLite consensus disorder prediction 990 1024 - -
Lan7g0998 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1088 - -
Lan7g0998 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Lan7g0998 1100 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Lan7g0998 1100 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Lan7g0998 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Lan7g0998 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1088 - -
Lan7g0998 1100 SUPERFAMILY FYVE/PHD zinc finger 621 695 IPR011011 -
Lan7g0998 1100 Gene3D - 459 626 IPR009091 -
Lan7g0998 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 698 IPR013083 -
Lan7g0998 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Lan7g0998 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Lan7g0998 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Lan7g0998 1100 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Lan7g0998 1100 SUPERFAMILY PH domain-like 13 123 - -
Lan7g0998 1100 MobiDBLite consensus disorder prediction 782 810 - -
Lan7g0998 1100 CDD PH_PLC_plant-like 12 124 - -
Lan7g0998 1100 Gene3D - 183 458 IPR009091 -
Lan7g0998 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Lan7g0998 1100 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Lan7g0998 1100 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Lan7g0998 1100 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Lan7g0998 1100 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Lan7g0998 1100 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Lan7g0998 1100 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Lan7g0998 1100 MobiDBLite consensus disorder prediction 921 945 - -
Lan7g0998 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 516 564 IPR000408 -
Lan7g0998 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 401 450 IPR000408 -
Lan7g0998 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Lan7g0998 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 464 512 IPR000408 -
Lan7g0998 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Lan7g0998 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Lan7g0998 1100 SUPERFAMILY RCC1/BLIP-II 234 622 IPR009091 -
Lan7g0998 1100 MobiDBLite consensus disorder prediction 143 225 - -
Lan7g0998 1100 ProSiteProfiles BRX domain profile. 1031 1086 IPR013591 -
Lan7g0998 1100 SMART fyve_4 620 688 IPR000306 GO:0046872
Lan7g0998 1100 MobiDBLite consensus disorder prediction 919 945 - -
Lan7g0998 1100 Coils Coil 821 862 - -
Lan7g0998 1100 Gene3D - 13 129 IPR011993 -
Lan7g0998 1100 MobiDBLite consensus disorder prediction 147 225 - -
Lan7g0998 1100 Pfam Transcription factor regulating root and shoot growth via Pin3 1030 1085 IPR013591 -
Lan7g0998 1100 Pfam Transcription factor BRX N-terminal domain 872 907 IPR027988 -
Lan7g0998 1100 MobiDBLite consensus disorder prediction 786 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0998 Lan-Chr7 9977418 9985312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0998 881 1094 Major Intrinsic Protein MIP AT1G31880 30.876 8.39e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0998 - - gmx:100805364 1783.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0998 7 9977418 9985312 Lan8g0769 8 9842068 9848894 PCT
Lan7g0998 7 9977418 9985312 Lan20g0080 20 432415 443648 PCT
Lan7g0998 7 9977418 9985312 Lan4g1831 4 26862747 26887772 PCT
Lan8g0769 8 9842068 9848894 Lan7g0998 7 9977418 9985312 PCT
Lan20g0080 20 432415 443648 Lan7g0998 7 9977418 9985312 PCT
Lan4g1831 4 26862747 26887772 Lan7g0998 7 9977418 9985312 PCT