Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0962 ATGGATTCTAATGGCATTCATGATAAGTGTGAAAGTAGACTATATATTGGTAACCTTGATCTCAAAATTACAGAAGCAACTCTGCTTAAAATGTTTTCCCCTTTTGGAAAGATCGTTTCCGAGGACTTCCTGTGGCACACTCGCGGCCCTAAACGAGGGGCACCCCGTGGTTTTGCTTTCATCCAGTATGACACAAGAGAGGAAGCTGAATTAGCCAAGGAGAAAATGCATGGGAGGTTAGCGTGTGGCCGGCCATTGGTCGTTCGTCTCGCCAGCGAGAAGTACATGTTGGAAACTGCGGAGAACTCTATGAAAGCTTCCGGAGAAGGGCACAAGATGCATCTCACTGGTGGTGCCATGGGGCAGACAAGTAGAAGTGCCAAAATAGCTGCAATAAAGAACAAATTGAAATCACTAGAGGAGGATAACTCTAGGAGCAAGAAGCAGAAGAAAACTGATGATACTTCTTGA 471 0.4544 MDSNGIHDKCESRLYIGNLDLKITEATLLKMFSPFGKIVSEDFLWHTRGPKRGAPRGFAFIQYDTREEAELAKEKMHGRLACGRPLVVRLASEKYMLETAENSMKASGEGHKMHLTGGAMGQTSRSAKIAAIKNKLKSLEEDNSRSKKQKKTDDTS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0962 156 MobiDBLite consensus disorder prediction 134 156 - -
Lan7g0962 156 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Lan7g0962 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 86 IPR000504 GO:0003723
Lan7g0962 156 CDD RRM_RBM18 13 92 IPR039157 -
Lan7g0962 156 Gene3D - 9 104 IPR012677 -
Lan7g0962 156 PANTHER RNA-BINDING PROTEIN 18-RELATED 7 152 - -
Lan7g0962 156 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 152 - -
Lan7g0962 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Lan7g0962 156 Coils Coil 129 149 - -
Lan7g0962 156 MobiDBLite consensus disorder prediction 119 156 - -
Lan7g0962 156 SMART rrm1_1 13 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0962 Lan-Chr7 9431909 9434492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0962 12 94 Eukaryotic Initiation Factors Gene Family AT3G16380 36.145 4.54e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0962 K24527 - gmx:100804800 257.299