Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0935 ATGGTTCAACCAAACCACTTCTCCACTCACACCACATGCCATCTTAGCCTTATTTTCTTCCCTCTCCTTCTCCTTTTACATGTAGCTGATGCACAAATATCAGCAGAACCAGTTCCCACATACATCTCCCACCACACTTGGCAACCTTCTTTTGCAATCACAACTGGAGCAATCATCTTTGCCCTTCTCATATTGGGATTGATCTCAATCTACATCAGAAACTGCACAAACTCACGATACAACCCCCGAACCAATAATACACTTGTTGGCACCACTAACACATCACAAAGGCCATGTTCTTGTTCACAAGGCATCACCAATGAACTCCTCAACACCTTCCCAATCCTCTTCTACTCCACCATCAAGGATCTCAAGATGGGAAAAGGATCACTAGAATGTGCTGTTTGCTTGAATGATTTCAAAGACTATGACACACTCAGGTTGCTTCCAAAATGTAACCACGTGTTCCACCCTTCTTGTATAGACTCATGGCTATGCTCACAAGTCACATGCCCCGTTTGTCGTGCCAATTTGAACCAAGATTCATGTGAAGTTTCAATGACGGTGGAGACCCAGTTGAGTAATCCTCAAAGGGTGTCAGAAAGTCCAGGTTTTATAGCAGATCATTTTGGTGGTGAAGAGCACTACAACAACAACCCAATAGAGCAAAACACAAACCAAGTTGCGATTAACTTGAAGGAAAGTGAAGGTAACAATGATTTGGGTTCATTAAAGATGAAGCATTTGAGGTCAAATTCAACTGGTCATTCAGTTCTGGAATCAGGTAAGAGTGTGGAAAGGTACACGCTTACGTTGCCTGAGGATGTTAGGAAGTACATTCTTGTGAACCATAACAACCATGGAAGAAGGGTTCAGCGTTCAGCTAGCTACAACAACGTTGTTATGATGCCAATGTTGGAGAGTCCTAGGAAATGTTGGAGTGACATTGAAGGGAATAATAAACTAAGGGTGTTGTTGACGCCGCAATTTGTTGCAAGCCGTGGTTAA 1008 0.4286 MVQPNHFSTHTTCHLSLIFFPLLLLLHVADAQISAEPVPTYISHHTWQPSFAITTGAIIFALLILGLISIYIRNCTNSRYNPRTNNTLVGTTNTSQRPCSCSQGITNELLNTFPILFYSTIKDLKMGKGSLECAVCLNDFKDYDTLRLLPKCNHVFHPSCIDSWLCSQVTCPVCRANLNQDSCEVSMTVETQLSNPQRVSESPGFIADHFGGEEHYNNNPIEQNTNQVAINLKESEGNNDLGSLKMKHLRSNSTGHSVLESGKSVERYTLTLPEDVRKYILVNHNNHGRRVQRSASYNNVVMMPMLESPRKCWSDIEGNNKLRVLLTPQFVASRG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0935 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 185 IPR013083 -
Lan7g0935 335 SUPERFAMILY RING/U-box 132 181 - -
Lan7g0935 335 SMART ring_2 133 174 IPR001841 -
Lan7g0935 335 Pfam Ring finger domain 132 175 IPR001841 -
Lan7g0935 335 CDD RING-H2_EL5_like 132 175 - -
Lan7g0935 335 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Lan7g0935 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 221 306 - -
Lan7g0935 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 195 - -
Lan7g0935 335 PANTHER RING FINGER DOMAIN-CONTAINING 10 195 - -
Lan7g0935 335 PANTHER RING FINGER DOMAIN-CONTAINING 221 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0935 Lan-Chr7 9006169 9007669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0935 20 281 Rapid Response to Elicitors AT3G05200 37.269 2.36e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0935 K10664 - gmx:100782532 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0935 7 9006169 9007669 Lan8g1082 8 14030746 14032125 LSH
Lan7g0935 7 9006169 9007669 Lan13g0768 13 7843569 7844682 LSH