Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0693 ATGTTCTTTTCACGGCATCTCACCGACACCACCTCCGCCGCCGCATCCGCCACCTCTTTCCGGTTCCCGTCTTCTGCTTCATCTGACGTTGACATTGCTCCTCCTGGTGTTCCTTCTAGAATCCCTTCCTCTACCTCTCACTTGTTCTCTCAACCTTCTCCTTGGTTCTCTTCTCCCTCTCTTGACCTCAAACGCTCTTCTTCTCAAGCACTCTACCATCCAACCATTTTGGGTATCCAAAACACAATTGGGCAAAATGAAGCTTGGTATTCTACAAGCCCTCTAGCCAAACGCCCTAGATACGAAAGTGGAAGCAATTTGCCTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTCGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAGATGTTACAAACGAAACTCTTCCCGAGAGACCAGGAGAACCAGATTGTCCATACTTTGTTAAAACTCAGAGATGCAAGTTTGGTCCAAGGTGCAAGTTTAATCATCCAAAGGTTTCCTCTGAAAGTGCTGGTGTTTCTGACTTACCTGATAGGCCGTCAGAGCCCCCGTGTGCGTTCTATGTGAAAACTGGAAGATGTAAATTTGGTGCTGCATGTAAATTCGATCACCCGAAAGATATCCAGATTCAGCTGTCAGGTGAACTGAGTCATACTGCTGAACAGACACAAACAAGTTTTATGATGGAGGGGGCAACAGTAGATACGCAAACAACTCTTACATCTCCACTATTTCAAAATAGTAAAGGGCTTCCTGTTAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTTCCTCTTGCCGCTACAATCATCCTGACAGGACAGCAATTAATCCGCCTGTTGCTGCATTAGGCCCTTCTGTCTTGGCATCCTCAGCTGCAAATCTGAATATTGGACTTATAAATCCTGCTGCACCTGTTTATCAAGCCTTTGACCCGAGGCTGTCAAACCCAATGTCTCAGCTGGGAATGGCAGAAACTACCTATCCTCAGCGACCCGGACAGATTGAATGTGATTACTATATGAAAACTGGCATATGTAAATTCGGGGAAAGGTGCAAGTTTCATCACCCAATTGACCGCTCAGCACCATCACAACAAACCGTTAAACTCACTCCTGCAGGATTACCTAGGAGAGAGGGTGCAGTGATTTGTCCATATTATTTGAAAACCGGCACATGCAAGTATGGTCCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTTTGGAGATGGCAAAATCACAAACCAATGGAGGGGATGCCAAAGACAATGAAAATGTATCTGCTTCTGCTTAG 1404 0.4615 MFFSRHLTDTTSAAASATSFRFPSSASSDVDIAPPGVPSRIPSSTSHLFSQPSPWFSSPSLDLKRSSSQALYHPTILGIQNTIGQNEAWYSTSPLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPDVTNETLPERPGEPDCPYFVKTQRCKFGPRCKFNHPKVSSESAGVSDLPDRPSEPPCAFYVKTGRCKFGAACKFDHPKDIQIQLSGELSHTAEQTQTSFMMEGATVDTQTTLTSPLFQNSKGLPVRLGEVDCPFYMKTGSCKYGSSCRYNHPDRTAINPPVAALGPSVLASSAANLNIGLINPAAPVYQAFDPRLSNPMSQLGMAETTYPQRPGQIECDYYMKTGICKFGERCKFHHPIDRSAPSQQTVKLTPAGLPRREGAVICPYYLKTGTCKYGPTCKFDHPPPGEVLEMAKSQTNGGDAKDNENVSASA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0693 467 ProSiteProfiles Zinc finger C3H1-type profile. 164 192 IPR000571 GO:0046872
Lan7g0693 467 SUPERFAMILY CCCH zinc finger 114 140 IPR036855 GO:0046872
Lan7g0693 467 ProSiteProfiles Zinc finger C3H1-type profile. 366 394 IPR000571 GO:0046872
Lan7g0693 467 SUPERFAMILY CCCH zinc finger 169 190 IPR036855 GO:0046872
Lan7g0693 467 MobiDBLite consensus disorder prediction 24 53 - -
Lan7g0693 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 369 392 IPR000571 GO:0046872
Lan7g0693 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 440 IPR000571 GO:0046872
Lan7g0693 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 306 IPR000571 GO:0046872
Lan7g0693 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 139 IPR000571 GO:0046872
Lan7g0693 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 166 191 IPR000571 GO:0046872
Lan7g0693 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 232 IPR000571 GO:0046872
Lan7g0693 467 SUPERFAMILY CCCH zinc finger 209 233 IPR036855 GO:0046872
Lan7g0693 467 ProSiteProfiles Zinc finger C3H1-type profile. 113 141 IPR000571 GO:0046872
Lan7g0693 467 SUPERFAMILY CCCH zinc finger 284 307 IPR036855 GO:0046872
Lan7g0693 467 Gene3D - 112 201 - -
Lan7g0693 467 Gene3D - 365 454 - -
Lan7g0693 467 Gene3D - 202 315 - -
Lan7g0693 467 PANTHER CCCH ZINC FINGER/TIS11-RELATED 63 453 IPR045877 GO:0003729
Lan7g0693 467 ProSiteProfiles Zinc finger C3H1-type profile. 413 441 IPR000571 GO:0046872
Lan7g0693 467 MobiDBLite consensus disorder prediction 39 53 - -
Lan7g0693 467 MobiDBLite consensus disorder prediction 453 467 - -
Lan7g0693 467 SMART c3hfinal6 164 191 IPR000571 GO:0046872
Lan7g0693 467 SMART c3hfinal6 413 440 IPR000571 GO:0046872
Lan7g0693 467 SMART c3hfinal6 366 393 IPR000571 GO:0046872
Lan7g0693 467 SMART c3hfinal6 113 140 IPR000571 GO:0046872
Lan7g0693 467 SMART c3hfinal6 205 232 IPR000571 GO:0046872
Lan7g0693 467 SMART c3hfinal6 280 307 IPR000571 GO:0046872
Lan7g0693 467 SUPERFAMILY CCCH zinc finger 417 440 IPR036855 GO:0046872
Lan7g0693 467 ProSiteProfiles Zinc finger C3H1-type profile. 280 308 IPR000571 GO:0046872
Lan7g0693 467 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 63 453 - -
Lan7g0693 467 MobiDBLite consensus disorder prediction 442 467 - -
Lan7g0693 467 ProSiteProfiles Zinc finger C3H1-type profile. 205 233 IPR000571 GO:0046872
Lan7g0693 467 SUPERFAMILY CCCH zinc finger 368 394 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0693 Lan-Chr7 5802552 5810505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0693 263 441 C2H2 Transcription Factor Family AT3G02830 36.667 1.27e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan7g0693 zf-CCCH 8.7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0693 - - lang:109352000 960.674