Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0659 ATGGCTGCGGTTGCTGAGATTGCTAACGATGCAGTAGCTCCCACTTCAACAAAGTTGGAGGACTCCACACCAAAGCCTGATGAATCTGAATTCAATGTGCAAAGTTTATCTGACATGTTCAAAAAGTTGAATCCTTTGGCTAAGGAGTTCATACCTTCATCTCATTCTCAACATGATCATGCTCATCAGAACTATAATCAGTTCATACCCAACAATTTTGTGGCCTTCAACATGCCCTTAGTTAATGGTCATAGCCCAAACATTCGTAGGGGAAGAGCTAATTTTAATCATGGTCGTGGAGGGAGAAGGATGGGTATTAGAATACCTAAGGTTCAGAGGGAAAACAGCGTTAGAAGAACAGTATATGTTTCTGACATTGATCAGCATATAACTGAGGAGCGGCTTGCTGACTTGTTCAGCACTTGTGGACATGTGATTGATTGCCGAATTTGTGGTGATCCTCGTTCAGTTCTTCGCTTTGCATTTGTGGAGTTCACCAATGAGCATGGAGCATGGGAAGCTTTAAGCCTTGATGGTAGGGTGCTTGGGTTCTCTGCAATCCGGGTCCTTCCCTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGCTGATGAACGCGAAATGTGTACAAGGACTGTCTACTGCACAAACATTGATAAGATGATTTCTCAGGCTGAAGTGAAGCAGTTTTTTGAATCATCTTGTGGGGAGGTCACTCGCTTGAGGCTTTTAGGAGATCATCAGCATTTAAGTCGAATTGCTTTTGTGGAGTTTGCAGTGGCTCAGAGTGCCATTATTGCACTGCGTTGCAGCGGGATGCTGTTGGGAACCCAGCAAGTCAGGGTAAGTCCCTCGAAGACTCCTGTTAGGCCAAGGGTCGGTCGTCCTACAGAGCAGAACTGA 918 0.4521 MAAVAEIANDAVAPTSTKLEDSTPKPDESEFNVQSLSDMFKKLNPLAKEFIPSSHSQHDHAHQNYNQFIPNNFVAFNMPLVNGHSPNIRRGRANFNHGRGGRRMGIRIPKVQRENSVRRTVYVSDIDQHITEERLADLFSTCGHVIDCRICGDPRSVLRFAFVEFTNEHGAWEALSLDGRVLGFSAIRVLPSKTAILPVNPTFLPRSADEREMCTRTVYCTNIDKMISQAEVKQFFESSCGEVTRLRLLGDHQHLSRIAFVEFAVAQSAIIALRCSGMLLGTQQVRVSPSKTPVRPRVGRPTEQN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0659 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Lan7g0659 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 284 IPR000504 GO:0003723
Lan7g0659 305 MobiDBLite consensus disorder prediction 1 30 - -
Lan7g0659 305 Gene3D - 204 297 IPR012677 -
Lan7g0659 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 194 IPR000504 GO:0003723
Lan7g0659 305 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 303 - -
Lan7g0659 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 292 IPR000504 GO:0003723
Lan7g0659 305 SMART rrm1_1 120 190 IPR000504 GO:0003723
Lan7g0659 305 SMART rrm1_1 217 288 IPR000504 GO:0003723
Lan7g0659 305 Pfam Ataxin-2 C-terminal region 39 55 IPR009818 -
Lan7g0659 305 SUPERFAMILY RNA-binding domain, RBD 206 298 IPR035979 GO:0003676
Lan7g0659 305 Gene3D - 111 190 IPR012677 -
Lan7g0659 305 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 303 - -
Lan7g0659 305 SUPERFAMILY RNA-binding domain, RBD 95 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0659 Lan-Chr7 5407674 5412069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0659 116 287 Eukaryotic Initiation Factors Gene Family AT1G34140 25.568 1.12e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0659 - - lja:Lj3g3v0409470.1 394.815