Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0624 ATGTCTCTCAGGAGAGTTTTTTGTTCTCGCAATTTTTCCACATCTTTCAACGAATTCGGAACCACCGTTGACGGTGTCGATCGGAGAAATGAAATCAATTCCGGCGAGGTGGACACGGAATACGGCAATGCATGGTCAGCGATGTTGCCGGAGATTCTCGGAGAGATTATACGGCGAGTTGAGGCCGATGAGGAACAATGGCCGCAGCGTCAAAACGTCGTCGCTTTTGCGTGCGTGTGCAAGAGGTGGAGAGACATCGCACGTGAGATTGTTATGGCGCATCCTCAAACCGGAAAAATCACTTTCCCTTCTTGTCTGAAACAGCCAGGACCACGCGACCTTCCTCAACAATGTCTTATAACGCGTAACAAGAAGACATCGACATTTTACCTACATCTTGCCCTTACACCGTCATTCACAGACAAAGGGAAGTTTCTCTTAGCTGCTAGAAGATCTAGGCATGGTGCCCATACAGAGTATATAATATCACTTGACGCTGATGACTTGTCCCAAGGAAGCACTGCATATGTTGGAAAGTTAAGATCAGATTTTCTTGGCACCAACTTCACAATATATGACAGCCAGCCACCTCATAGCAGTGCAAAACCATCAAGCAGCATGGTCTGCCGTCGTTTTTCCAGCAAGCAAATAAGCCCTCAAGTTCCCGCAGGCAACTTTGAGGCAGGGCAGGTATCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCACTGAAAGGTCCCATATTATCGTCAAAAGACAGTTCAGATAGTAAAAACCTGGGTAGCCATAAGATGAACCATAAAGATGATGCTGCCTCTGGCTACTTAATCCTGAAGAACAAAGCTCCAAGGTGGCACGAACATATACACTGCTGGTGTTTGAATTTCCATGGCCGTGTAACTGTAGCATCGGTTAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGTAAACCAGGAGGGAAAGGTGATGAGGAAAAGGTTCTCCTTCAGTTTGGGAAGGTAGGAGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCCTTTCAGGCATTTGCCATTTGTTTGACTAGCTTTGGCACTAAACTAGCATGTGAGTAA 1125 0.4613 MSLRRVFCSRNFSTSFNEFGTTVDGVDRRNEINSGEVDTEYGNAWSAMLPEILGEIIRRVEADEEQWPQRQNVVAFACVCKRWRDIAREIVMAHPQTGKITFPSCLKQPGPRDLPQQCLITRNKKTSTFYLHLALTPSFTDKGKFLLAARRSRHGAHTEYIISLDADDLSQGSTAYVGKLRSDFLGTNFTIYDSQPPHSSAKPSSSMVCRRFSSKQISPQVPAGNFEAGQVSYKFNLLKSRGPRRMVCSLKGPILSSKDSSDSKNLGSHKMNHKDDAASGYLILKNKAPRWHEHIHCWCLNFHGRVTVASVKNFQLVATVDQSKPGGKGDEEKVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0624 374 ProSitePatterns Tub family signature 1. 302 315 IPR018066 -
Lan7g0624 374 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 374 - -
Lan7g0624 374 Pfam Tub family 106 369 IPR000007 -
Lan7g0624 374 Pfam F-box domain 50 90 IPR001810 GO:0005515
Lan7g0624 374 Gene3D Tubby Protein; Chain A 101 374 IPR025659 -
Lan7g0624 374 PRINTS Tubby superfamily signature 160 176 IPR000007 -
Lan7g0624 374 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Lan7g0624 374 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Lan7g0624 374 PRINTS Tubby superfamily signature 284 301 IPR000007 -
Lan7g0624 374 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Lan7g0624 374 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Lan7g0624 374 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Lan7g0624 374 PANTHER TUBBY-RELATED 1 374 - -
Lan7g0624 374 ProSitePatterns Tub family signature 2. 359 374 IPR018066 -
Lan7g0624 374 SUPERFAMILY Tubby C-terminal domain-like 96 374 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0624 Lan-Chr7 4913499 4917524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0624 1 374 TUB Transcription Factor Family AT1G53320 69.737 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan7g0624 Tub 7.2e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0624 K19600 - gmx:100808096 587.03