LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan7g0540	ATGGCTTCTATACCTTTGGGGCCGCACCACCGACCACCGGCGCCACCGCAACATCCTCAACCTGATGTGGCTCGCCGGAGCTCTGACATGGACAGCGATAAGGATATGTCAGCTACTGTCATTGAAGGGAATGATGCAGTCACTGGCCACATTATCTCCACCACAGTTGGAGGCAAAAATGGTGAACCTAAACAGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACCGGGGAGGCAGTAGCTATAAAGAAGGTCTTGCAGGACAGGCGGTACAAAAATCGTGAGCTTCAGCTAATGCGCTTGATGGATCACCCAAATGTAATTTCTCTGAAGCACTGTTTCTTCTCTACGACAAGTAAAGATGAACTTTTTCTGAACTTGGTAATGGAATATGTCCCTGAGACGATGTACCGGGTTCTAAAGCACTACAATAATATGAACCAGAGAATGCCCCTCATCTATGTGAAACTATATACTTATCAGATCTTTAGGGGACTAGCATATATCCATACCGTACCAGGAGTTTGTCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCATCAAGTTAAGCTTTGTGATTTCGGGAGTGCAAAAATTCTGGTCAAGGGCGAAGCAAACATTTCGTACATTTGTTCACGTTACTACAGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCTGCTGGCTGTGTCCTTGCTGAACTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTCGTGGAAATAATTAAGGTTCTTGGTACTCCGACTCGAGAAGAAATTCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGGTTAAAGCTCATCCTTGGCACAAGGTTTTTCACAAGCGAATGCCCCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCGCTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGTGAGCCGAATGCTCGACTACCTAATAGCCGTCCATTGCCCCCACTTTTCAACTTTAAACATGAATTAGCTGGAGCATCACCTGAACTGATCAACAGGCTCATCCCAGAGCACATTAGGCGTCAGACCAGTCTCAGCTTCCCTAATCCTAATCCGGCTGATACATAG	1236	0.4547	MASIPLGPHHRPPAPPQHPQPDVARRSSDMDSDKDMSATVIEGNDAVTGHIISTTVGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYNNMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKILVKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQVKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNSRPLPPLFNFKHELAGASPELINRLIPEHIRRQTSLSFPNPNPADT*	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan7g0540	411	PANTHER	OS02G0236200 PROTEIN	27	401	-	-
	Lan7g0540	411	MobiDBLite	consensus disorder prediction	1	35	-	-
	Lan7g0540	411	CDD	STKc_GSK3	64	356	IPR039192	-
	Lan7g0540	411	SMART	serkin_6	69	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan7g0540	411	SUPERFAMILY	Protein kinase-like (PK-like)	68	378	IPR011009	-
	Lan7g0540	411	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Lan7g0540	411	Gene3D	Phosphorylase Kinase; domain 1	54	148	-	-
	Lan7g0540	411	ProSiteProfiles	Protein kinase domain profile.	69	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan7g0540	411	ProSitePatterns	Protein kinases ATP-binding region signature.	75	99	IPR017441	GO:0005524
	Lan7g0540	411	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	27	401	-	-
	Lan7g0540	411	Pfam	Protein kinase domain	69	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan7g0540	411	Gene3D	Transferase(Phosphotransferase) domain 1	149	396	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan7g0540	Lan-Chr7	3974794	3980385	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan7g0540	73	391	MAP Kinase Gene Family	AT3G59790	34.545	3.56e-57	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lan7g0540		Pkinase	8.9e-64	CL0016