Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0481 ATGGCCATGGACCAGGACTTTGAGGAGGCTGTGCACGAAATCGGTTCCTTTGAAGATAAACCATATTTTGGAAAGCCGAAATCTTCCAGTGATGCCATTGCAGATTCTGATAGAAATGGCTCTGGTGGCTTTGACTGCAACATCTGCTTGGATTGTGTGGAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTATAAATGGCTGAATTTCAGAAACATTTCTTCCGAAGAGCAGCAGAAGCAACAATGTCCAGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCACTGTATTGCCGCAGCCAAACCAGACGAGTTTCTGAAGGAAAGGATCGTCAAATAGGGACAGTCATACCGCGGAGACCCCTAGCTCCAAGATCTTATAATACTACATATGCTTCTCATCCTACTTCTCAAAGCTATCATCGTCATCATCCGTATCAGCCTCAGCAATTCAACTCAATTCCAAGCAGTTACACTTCACCCATGCTCACCCCAAGTGGTTTACAAGATATGCCATTTGGACTCTTCGGTGGTATGATATATGCAAGGGTCTTTGGTAACCAGGTGACAGACATTTATGCATATCCTAATTCTTATAATAATTCAGGAAACAGTAACCCAAGAATCAGAAGGCATTTAATGGAAGTTGATAAATCACTGAGTAGAATCTGTTTTTTCCTACTTTGCTGCCTAGTTATGTGCCTTCTCTTGTTCTGA 741 0.4278 MAMDQDFEEAVHEIGSFEDKPYFGKPKSSSDAIADSDRNGSGGFDCNICLDCVEDPVVTLCGHLYCWPCIYKWLNFRNISSEEQQKQQCPVCKSEVSQSSLVPLYCRSQTRRVSEGKDRQIGTVIPRRPLAPRSYNTTYASHPTSQSYHRHHPYQPQQFNSIPSSYTSPMLTPSGLQDMPFGLFGGMIYARVFGNQVTDIYAYPNSYNNSGNSNPRIRRHLMEVDKSLSRICFFLLCCLVMCLLLF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0481 246 Pfam Zinc finger, C3HC4 type (RING finger) 46 92 IPR018957 GO:0046872
Lan7g0481 246 SUPERFAMILY RING/U-box 39 98 - -
Lan7g0481 246 SMART ring_2 46 92 IPR001841 -
Lan7g0481 246 CDD RING-HC_AtRMA_like 44 94 - -
Lan7g0481 246 ProSiteProfiles Zinc finger RING-type profile. 46 93 IPR001841 -
Lan7g0481 246 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Lan7g0481 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan7g0481 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 127 IPR013083 -
Lan7g0481 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0481 Lan-Chr7 3519780 3522800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0481 18 231 C3H Transcription Factor Family AT4G27470 36.842 5.37e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0481 K10666 - gmx:100780643 305.064