Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0406 ATGTCAATGGACATGATGGCAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATATAGCAGTTTGCTTACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTTAACATGGGAGCTTCACTTCAACCATTTCCTCCTCCTCAAGATTTTCATCAGAAACAGCACCTAAGCATTGATGAATCAAGCAGCAATGAGGAACTGGGATCATCTTCAAAATGTAACAAAATAATGGCATTTGAGCCTGTAGAGCACGAACAACCTAGGATTCCTCCCATTCGTCCCCCAGAAAAGAGGCAACGTGTTCCTTCTGCTTATAACCGGTTCATCAAGGAAGAAATCCAAAGGATTAAGACAGGTAATCCTGATATCAGCCACAGGGAGGCTTTCAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCATACTCAGTTTGGGTTAAAGCTGGATGGCAAAAACAAACAAGCAAAGTTTGACCAAGGAACTGAAGCAACTCAAAAATCTAACAGGATGATGGGATAA 561 0.4278 MSMDMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPPQDFHQKQHLSIDESSSNEELGSSSKCNKIMAFEPVEHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKTGNPDISHREAFSTAAKNWAHFPHTQFGLKLDGKNKQAKFDQGTEATQKSNRMMG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0406 186 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 182 - -
Lan7g0406 186 MobiDBLite consensus disorder prediction 58 84 - -
Lan7g0406 186 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Lan7g0406 186 MobiDBLite consensus disorder prediction 166 186 - -
Lan7g0406 186 Pfam YABBY protein 7 160 IPR006780 GO:0007275
Lan7g0406 186 Gene3D High mobility group box domain 105 185 IPR036910 -
Lan7g0406 186 SUPERFAMILY HMG-box 102 155 IPR036910 -
Lan7g0406 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0406 Lan-Chr7 2843342 2848181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0406 1 182 C2C2-YABBY Transcription Factor Family AT1G08465 63.978 5.75e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lan7g0406 YABBY 2.4e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0406 K25796 - gmx:100500091 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0406 7 2843342 2848181 Lan8g1565 8 22686728 22693299 LSH
Lan10g0020 10 105432 110846 Lan7g0406 7 2843342 2848181 PCT
Lan3g0015 3 173284 177380 Lan7g0406 7 2843342 2848181 PCT
Lan7g0406 7 2843342 2848181 Lan10g0020 10 105432 110846 PCT
Lan7g0406 7 2843342 2848181 Lan3g0015 3 173284 177380 PCT