Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0404 ATGTTTGGGAGAGCACCGAAGAAGAGCGATAACACTAAATACTATGAAATCCTCGGTGTTGCCAAGAGTGCTTCTCCGGATGATCTAAAAAAGGCTTACAAGAAAGCCGCGATCAAGAATCATCCCGATAAAGGTGGTGATCCTGAAAAGTTCAAAGAGTTGGCTCATGCTTATGAGGTTCTGAGTGACCCTGAAAAGCGTGAGATATATGATCAGTATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGCGGTGGTGGTGGACATGACCCTTTTGATATCTTTGGTTCTTTCTTCGGTGGTGGTGGAAGTCCGTTTGGTGGTGGTAGCAGCCGAGGAAGGAGGCAGAGGCGTGGAGAAGATGTGGTTCACCCCCTCAAGGTCAGTTTGGAGGACCTTTACAGTGGGACATCCAAAAAGCTCTCCCTTTCTAGAAACGTCATATGCTCAAAGTGCAGCGGGAAAGGGTCTAAGTCAGGTGCTTCCACAAAATGTGCCGGTTGTCAAGGGACTGGTATGAAGGTTTCTATCAGGCACCTTGGTCCTTCTATGATTCAGCAAATGCAACATGCCTGCAATGAATGTAAGGGTACTGGAGAAACCATCAATGATAGGGACCGCTGCCCTCAGTGCAAGGGAGAGAAGGTTGTTCAAGAGAAGAAAGTACTTGAAGTTGTTGTGGAGAAGGGAATGCAGAATGGCCAGAAGATTACATTCCCCGGTGAAGCTGATGAAGCGCCAGACACTGTTACCGGAGACATTGTCTTTGTCCTTCAGCAGAAGGAACACCCAAAGTTCAAGAGAAAGGCAGAAGATCTCTTTGTGGAGCACACTTTGTCCCTCACTGATGCTTTATGTGGCTTCCAATTTGTGCTGTCTCACTTGGATGGCCGCCAGCTCCTTATTAAATCAAACCCTGGTGAAGTTATCAAACCTGATTCATACAAGGCAATTAATGACGAGGGAATGCCATTGTATACAAGGCCATTCATGAGGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCTGAATCCATAAGTCTTGATCAGGTTAAGTCATTAGAGGCTGTCCTGCCACCAAAGCCTGCATCGAAGTTAACAGACATGGAGCTGGACGAGTGTGAGGAGACTACACTGAATGATGTGAACATGGAGGAGGAGTCAAGGAGGAAGCAACAGCAAGCTCAACAGGAGGCTTATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGAGTACAGTGCGCTCAGCAGTAG 1260 0.473 MFGRAPKKSDNTKYYEILGVAKSASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFGSFFGGGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYSGTSKKLSLSRNVICSKCSGKGSKSGASTKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVVVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTDALCGFQFVLSHLDGRQLLIKSNPGEVIKPDSYKAINDEGMPLYTRPFMRGKLYIHFTVEFPESISLDQVKSLEAVLPPKPASKLTDMELDECEETTLNDVNMEEESRRKQQQAQQEAYDEDDDMPGGAQRVQCAQQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0404 419 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Lan7g0404 419 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Lan7g0404 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lan7g0404 419 CDD DnaJ 14 63 IPR001623 -
Lan7g0404 419 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Lan7g0404 419 Gene3D DnaJ domain 10 109 IPR036869 -
Lan7g0404 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 370 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lan7g0404 419 Gene3D - 110 261 - -
Lan7g0404 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 419 IPR044713 GO:0006457|GO:0030544
Lan7g0404 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Lan7g0404 419 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Lan7g0404 419 Gene3D - 149 215 - -
Lan7g0404 419 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 419 - -
Lan7g0404 419 MobiDBLite consensus disorder prediction 379 419 - -
Lan7g0404 419 CDD DnaJ_C 120 347 - -
Lan7g0404 419 SMART dnaj_3 12 66 IPR001623 -
Lan7g0404 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lan7g0404 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lan7g0404 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lan7g0404 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 115 273 IPR008971 GO:0006457|GO:0051082
Lan7g0404 419 MobiDBLite consensus disorder prediction 383 399 - -
Lan7g0404 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Lan7g0404 419 Gene3D - 263 345 - -
Lan7g0404 419 SUPERFAMILY Chaperone J-domain 8 110 IPR036869 -
Lan7g0404 419 Pfam DnaJ domain 13 71 IPR001623 -
Lan7g0404 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 353 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0404 Lan-Chr7 2800997 2817051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0404 14 73 C2H2 Transcription Factor Family AT1G74250 44.928 9.42e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0404 K09503 - gmx:547558 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0404 7 2800997 2817051 Lan7g0404 7 2800997 2817051 ECH
Lan7g0404 7 2800997 2817051 Lan8g1570 8 22721181 22726910 LSH
Lan7g0404 7 2800997 2817051 Lan13g0525 13 3959392 3961704 LSH
Lan10g0018 10 99270 101442 Lan7g0404 7 2800997 2817051 PCT
Lan7g0404 7 2800997 2817051 Lan10g0018 10 99270 101442 PCT