Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0390 ATGTCAGGCACGACGCCACCACCCTCCGCCGCATCTGTCCCGTCCGATCAGATCATGCATTCCATGAAACGCCAACTTCCGTTTTCATCGATGAAACCGCTTTTTGTCGCTGCCGGAGATTATCATCGCTTCGCCCCTGATCGACGCCGAAATGTTGATCAACCAGCCGAGGCCTTAGTCGTCAAGTCTCATAAATTGAAGCGGAAGAATGAAGTGGCTGATTTTGAAGCCCATTCGGGTGATAGCATGAATCTTGGATCCACTGAGGCAGCTAATACACCTTTTCAGCCACCTGTATCAGCAAAGACGGGGAAGGGTAGCAAGTCCTCCAGGCTTACAAAATGCAGTGGATATGGACCTGAAACCCCAGGATCAAATATTGGTTCTCCTTCAGGCAACAATCTCACACCCGCTGGTCCATGTCGTTACGACAGCTCTTTAAGTTTGTTGACAAAGAAATTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATCTGAATAATGCTGCTGACACATTGGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAAGGACTGGATGTCTCAAGACCAGAGGAGGCTGAAGATAGTTTTAGTAGCTTACAGGCAGAAGTCGAAAATCTTGCAATGGAGGAGTGCCGGTTAGATGAGCAAATAAGAGAGATGCAAGAAAGACTACGAGACCTTAGTGAAGATGAAAACAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATTGTAATTAAAGCTCCACATGGCACCACTTTAGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGAAGATACAGGATGGTCCTGAGAAGCACAATGGGTCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTGTTGAAGTTGCTCCCAAATTTCCACCCACTCCAGAATTTAGCAAACAACAACCAATATTGGTCACCAATGATAGAGGGAAGGGCATAGCAGAGGATAGAGGGAAAGGAATAGAAGTGCAGGGACAAGATGAACATGGGCCTAGTTCAGATTTTACTATCGCACAGGACTTTGTGAGCGGGATAATGAAGATTGTTCCTTCAGATGTTGATAGTGATGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGTATAACAGACATGTGGAGAACAGAATCTGGACTTGAGTGGAACGAACTGGATAGTACACTTCAAGAAGATGATCGTGTAACTCATGAGCCTCCTGCTGCCCCAACTCATCCTCCAAATGCTAGTGAAGCCCCTGCAACATCTAACCGTACCGGAGGTTGA 1413 0.4444 MSGTTPPPSAASVPSDQIMHSMKRQLPFSSMKPLFVAAGDYHRFAPDRRRNVDQPAEALVVKSHKLKRKNEVADFEAHSGDSMNLGSTEAANTPFQPPVSAKTGKGSKSSRLTKCSGYGPETPGSNIGSPSGNNLTPAGPCRYDSSLSLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPEEAEDSFSSLQAEVENLAMEECRLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIVIKAPHGTTLEVPDPDEAVDYPQRRYRMVLRSTMGPIDVYLVSQFEEKFEEINGVEVAPKFPPTPEFSKQQPILVTNDRGKGIAEDRGKGIEVQGQDEHGPSSDFTIAQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTESGLEWNELDSTLQEDDRVTHEPPAAPTHPPNASEAPATSNRTGG* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0390 470 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Lan7g0390 470 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Lan7g0390 470 Coils Coil 158 178 - -
Lan7g0390 470 PANTHER TRANSCRIPTION FACTOR E2F 19 463 IPR015633 GO:0000978|GO:0006357
Lan7g0390 470 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Lan7g0390 470 Gene3D - 136 209 IPR036388 -
Lan7g0390 470 MobiDBLite consensus disorder prediction 78 133 - -
Lan7g0390 470 Coils Coil 237 261 - -
Lan7g0390 470 Gene3D - 214 324 - -
Lan7g0390 470 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Lan7g0390 470 MobiDBLite consensus disorder prediction 81 133 - -
Lan7g0390 470 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Lan7g0390 470 MobiDBLite consensus disorder prediction 433 470 - -
Lan7g0390 470 PANTHER TRANSCRIPTION FACTOR E2FB 19 463 - -
Lan7g0390 470 CDD E2F_DD 218 324 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0390 Lan-Chr7 2644183 2648695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0390 17 469 E2F-DP Transcription Factor Family AT5G22220 54.298 3.79e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan7g0390 E2F_CC-MB 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0390 K06620 - gmx:100819817 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0390 7 2644183 2648695 Lan7g0390 7 2644183 2648695 ECH
Lan7g0390 7 2644183 2648695 Lan8g1580 8 22856890 22863691 LSH
Lan7g0390 7 2644183 2648695 Lan13g0444 13 3218227 3222901 LSH