Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan7g0378 | ATGAAGTTTTTGGTTGTAGGCATTGCCATAATGAAGCTAAGGTTATCTGCTCCTTATGTGACATCGAACAAGATGTTTAACAGTACTGCACCAGATGTGGAGTATGCATGGGCAAGTATTATTGTGGTACATGCAAATTCTTCGATGATGATATTTGGAAGGAACAATACCACTGTGACGAATGTGGCATCTGCAGAAGCGGAGGTATGGATAACTTCTTTCATTCTAAGAGATGTGAAAATAGAAGAGGGGCATCCTTGTGTGGAAAGAGCAATGCATCACAATTACCCCATTTGCTTTGAGTACCTATTTGAAACATTAAGAGATGTTACTGTCTTACCTTGTGGACATACCATACATATAGAGTGTGTTAGAGGGATGAAACAACTTCATAGGTACGCATGCCCTGTTTGCTCAAAATCCATGTGTGACATGACAAACTTGTGCAAGAAGCTCGATGATGTGGTTGCCTCAACTCCAGTGCCGGAAATGTACAAAGATAAGATGGTCTGGATACTATGCAATGATCGTGGAGCAAACTCTCACGTACAATTTCACATTGTGGCGCATAAGTGCAAGTGTTGCAACTCTTACAACACAAGACAGATACAGGGAAACCCTGGTAACTCATGCTCATCTTGA | 642 | 0.4128 | MKFLVVGIAIMKLRLSAPYVTSNKMFNSTAPDVEYAWASIIVVHANSSMMIFGRNNTTVTNVASAEAEVWITSFILRDVKIEEGHPCVERAMHHNYPICFEYLFETLRDVTVLPCGHTIHIECVRGMKQLHRYACPVCSKSMCDMTNLCKKLDDVVASTPVPEMYKDKMVWILCNDRGANSHVQFHIVAHKCKCCNSYNTRQIQGNPGNSCSS* | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan7g0378 | 213 | ProSiteProfiles | Zinc finger RING-type profile. | 97 | 139 | IPR001841 | - | |
| Lan7g0378 | 213 | Pfam | Zinc-ribbon | 143 | 201 | IPR039512 | - | |
| Lan7g0378 | 213 | Pfam | Zinc finger, C3HC4 type (RING finger) | 97 | 138 | IPR018957 | GO:0046872 | |
| Lan7g0378 | 213 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 167 | IPR013083 | - | |
| Lan7g0378 | 213 | Gene3D | - | 168 | 207 | - | - | |
| Lan7g0378 | 213 | SUPERFAMILY | RING/U-box | 97 | 146 | - | - | |
| Lan7g0378 | 213 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 80 | 210 | - | - | |
| Lan7g0378 | 213 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RZFP34 | 80 | 210 | - | - | |
| Lan7g0378 | 213 | SMART | ring_2 | 97 | 138 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan7g0378 | Lan-Chr7 | 2567224 | 2571909 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan7g0378 | 85 | 206 | C2H2 Transcription Factor Family | AT3G18290 | 41.803 | 4.77e-26 | 103 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan7g0378 | K10144 | - | pop:7463321 | 223.016 |