Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0359 ATGGATTTGAGGGAATGCAACAATATTGTAGAGGACAAGAAGTTGTACCTTCATTCCCCAACTTTCATTGAATGGCTAAAACCATCTAATTCCTCTCCTTCATATCAAACTCCCACAGTATCATCATCAATATCTTCTCCTTTTTCTATGACTCAAAATGAGCTTGACCATGAAACTATCCAGTTTTTGCCCATCTTAAGTGGAAAGCCCTCACAAGAAGACCTAAAAATGGAGGGTTTTGAGGTAAATGAAGAGAAGGTGGAACAAATGACTGTGACTTTGCATATTGGATTGCCTCATAGTAATTCTACTACTGATCATGAGTACCCTGATGAAAAGAAGAAGGTTTTCCATGTTAAGGAAGAAGAAGAAGAAGAAGAAGATACCTTGATAAAAACAAACTTCCATGGGAGCTCAGAGAGAAGGTTTTGGATACCAAGTCCAGCACATATACTTGTTGGACCGATGCAGTTTGCTTGCAACATATGCAGCAAGACCTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCCGAGTATAGGAAAGGACTAAACTCACTTAGAGGAACACAACCAGCTGAAATGCTTAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCACCCTAGAGCAAAGCCATTGAAGGACTTCAGGACACTCCAAACCCACTACAAAAGAAAGCATGGCACAAAACCATTCACGTGCAGAAAATGTGCCAAAACATTTGCAGTCAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACATGTGGTTCTGACTTCAAGCATAAGAGGTCTCTTAAGGATCACATTATATCCTTTGGAAAGGGTCATAACCCACGTCCTAATTCTCTTAAAGAATTTGATTGCATTACTGGGTCTGATGAAGATCATGAAGTGGTTCATAACACAATCATCTAG 966 0.4017 MDLRECNNIVEDKKLYLHSPTFIEWLKPSNSSPSYQTPTVSSSISSPFSMTQNELDHETIQFLPILSGKPSQEDLKMEGFEVNEEKVEQMTVTLHIGLPHSNSTTDHEYPDEKKKVFHVKEEEEEEEDTLIKTNFHGSSERRFWIPSPAHILVGPMQFACNICSKTFNRYNNMQMHMWGHGSEYRKGLNSLRGTQPAEMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFTCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIISFGKGHNPRPNSLKEFDCITGSDEDHEVVHNTII* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0359 321 SMART c2h2final6 205 237 IPR013087 -
Lan7g0359 321 SMART c2h2final6 158 180 IPR013087 -
Lan7g0359 321 SMART c2h2final6 242 262 IPR013087 -
Lan7g0359 321 SUPERFAMILY beta-beta-alpha zinc fingers 228 262 IPR036236 -
Lan7g0359 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Lan7g0359 321 Gene3D Classic Zinc Finger 155 180 - -
Lan7g0359 321 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Lan7g0359 321 SUPERFAMILY beta-beta-alpha zinc fingers 149 181 IPR036236 -
Lan7g0359 321 Gene3D Classic Zinc Finger 198 290 - -
Lan7g0359 321 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 314 - -
Lan7g0359 321 PANTHER ZINC FINGER PROTEIN WIP2 1 314 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0359 Lan-Chr7 2461450 2465061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0359 8 316 C2H2 Transcription Factor Family AT1G08290 53.216 1.28e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan7g0359 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0359 - - gmx:100802773 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0359 7 2461450 2465061 Lan7g0359 7 2461450 2465061 ECH
Lan7g0359 7 2461450 2465061 Lan8g1603 8 22989381 22992357 LSH
Lan7g0359 7 2461450 2465061 Lan13g0429 13 3088865 3091822 LSH