Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0331 ATGGCTAAAGGTACGGATTTGGAGCAATCTGTGGCAATGTCTCGGTTCCGTACAGGTCTCAAGAGGGAGCTTGCATTTGCTTTGAAGGCTCAGTCTGAAATCAATGGCGGCTCTCTCGGTCGAACTCGGTCAGGCAAGAACCGGAATACGATTCAGGTTCAAACCACTCCTGCAAGAAAGCGACCCAAGAAGGAAAAGAATGTGGGTGGTGATGCTGTGAGTGAGGAGGAGGAAGCGAAAAGTGACGTCGTGGATCCTAAGATTGGAGAATTGATTGAAAAGAGGGAACTTGAGGTTGAGAGAGCAAGGCCAATGGGTGTTTCTGAAGAGGAACCAAAGAGTGATGCTGTGGTAGAAACTGCCAGTGACGATGAACCTAAACCCGGTGGCGATGAAATTGTGCACCCCATTGTTAAAAGTGAGGTGAAAGAAGAACCCAAGGTGGAAAAGAGGGAGCTTGTTGTTTGTGGAGAGGAACCAAAGAGTGATGTCCTGCTAGAAACTGGGAGTAATGTTGGACCGAAATCTGGTAATGAAGTTGGGCAACCAATTTGTGAAAGTGGGATGGATAGAGTTGATAGATCACCTTCTCCTCCCAAGGAAGAAAGTTTTAATAATGGGACAACCTTAGTATTGGTTAATGATGATCCTAAGGTGAACAAGATATCTGTAGAGAAGCCTGTAAGACGATTTACGCGGTCAGCACTGAAGAAAACAGTGAGTGATGCAAAGGTTGCGAGTGTTGAGGAAAATGCTAGTATCAAAGCTGTTGATATTGGTGATGTGAAAAAGGAAATTGAGGCGGAAAAGTTAATAGCTGCGACAAGTCGAATGGAGTTGTCTAAGACTGCGACCAGGAAGAAGTTACCATCAAAGTTGGAGGACCTTCTGGCCACAGGGATTCTCGAGGGACTAGCGGTGAATTATGTCTGTGGAGTGAAGGGCCAAAGGCCTGGAGAATTTGGTCTTAGGGGAGTGATTAGAAGCAACGGGATTGTGTGCCATTGTGAAATTTGTAACGGGGTTGAGGTTGTCACACCCACTGTGTTTGAGCTTCATGCTGGTAGTTCAAACAGATGCCCGCCGGGATATATATATCTTGAGAATGGGAATACTCTTTTTGATATCATGACTACATGTTTGAATGTTCCTTTAGACACCATGGAGGAAGCTGTCCAAACTGTCCTTGGAGGGTTCACTATGAAGAAATCTACCTTCTGTTTTAACTGCGAAGATGTCAATGTTGTATCAAGACTATTGTGCAATTCATGCTTGGAATTGAAGGACTGTCAACCTAGCCCAGCTCAAACAACTGTTCCATCCAGATCTCTGGAACCAGTTGTGAACACAAAATCATTAAACAATGGAATGAAGCACAGCACATCCCGTGATAAGAGTCACGGAAAACTAACTAGGAAGGATTTACGCTTGCATAAGCTGGTATTTGAAGAAGATGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGCGGGGAGCAACTGTTGGTTGGTTATAAAAAAGGTTTTGGAATCGTTTGTAGCTGTTGCAACTCTCTGGTCAGCCCCTCCACATTTGAAGCTCATGCTGGCTGGCCATCGCGACGGAAGCCTTACCTGAACATATACACATCTAATGGAGTCTCACTCCATGAGCTGTCCATCTCTCTGTCAAAAGATCCAAGGTTTTGTATCAGAGATAATGACGATCTCTGCACTATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGCATTCCCAGCGGTACCTGGTATTGTAAATATTGCATGAATATTTTCCAGAGAGAAAAATATGTGGAACATAATGCAAATGCTCGGGCAGCTGGAAGGGTTGCAGGTGTTGATCCTTTAGAACAGATACACCAGAGGTGCATACGTATAGTCAAAACTGGAGAGTTTGACAATGATGGATGTGTACTATGCAGAGGCCGTGATTTTAGCAAAAGCTTTGGTCCTCGTACAGTAATTATTTGTGATCAGTGTGAAAGAGAATATCATGTTGGTTGTTTGAAGGATCATAACATGCAAAACCTAGAGGCATTGCCTGAAGGGAATTGGTTCTGCTGCTCAGATTGCAATCAAGTCCATACTGCTCTATTGAATTTGACAGCTTGCGGGGAAGAGGAACTTCCAGTTTCCCTTGTAAGTTTGATTAAAAGGAAACGTGAAGAAAAAGGTTTAGAAACTGAAGCTGGTCCTGATATAAAATGGATGGTTTTGAACTGGAAAATGGTTGCTTCTGATGAGAATAGACAGTTGCTTTCTAAGGCTGTTGCGATCTTTCATGAGCAGTTTGATCCTATAGTTGATTCTGCTTCTGGCCTTGATTTCATTCCAGCAATGCTTTATGGAAGGAGCATCAATGGCCATGATTTTGGTGGAATGTACTGTGCAATGCTCACTGTCAACCAAGTGGTTGTATCTGCCGGAATATTTCGTATATTTGGGTCAGAAGTAGCAGAGCTTCCCTTGGTGGCAACAATTGCAGATTACCAAGGACAGGGTTACTTCCAGTCCCTTTTTGCTTGCATTGAGAGGCTGCTTGGATCACTAAATGTGAGACATCTGGTCCTACCAGCTGCTGAGGAAGCTGAATCAATATGGACCAGTAAATTTGGGTTCAAAAAGCTAGGCCAAGATGAGATAAACAATTATAAGAGACAATATCGCTTAATGGCATTTCAAGGGACCCCATTACTACAAAAGCCAGTTCCTGCACCCTGA 2790 0.4373 MAKGTDLEQSVAMSRFRTGLKRELAFALKAQSEINGGSLGRTRSGKNRNTIQVQTTPARKRPKKEKNVGGDAVSEEEEAKSDVVDPKIGELIEKRELEVERARPMGVSEEEPKSDAVVETASDDEPKPGGDEIVHPIVKSEVKEEPKVEKRELVVCGEEPKSDVLLETGSNVGPKSGNEVGQPICESGMDRVDRSPSPPKEESFNNGTTLVLVNDDPKVNKISVEKPVRRFTRSALKKTVSDAKVASVEENASIKAVDIGDVKKEIEAEKLIAATSRMELSKTATRKKLPSKLEDLLATGILEGLAVNYVCGVKGQRPGEFGLRGVIRSNGIVCHCEICNGVEVVTPTVFELHAGSSNRCPPGYIYLENGNTLFDIMTTCLNVPLDTMEEAVQTVLGGFTMKKSTFCFNCEDVNVVSRLLCNSCLELKDCQPSPAQTTVPSRSLEPVVNTKSLNNGMKHSTSRDKSHGKLTRKDLRLHKLVFEEDVLPDGTEVAYYARGEQLLVGYKKGFGIVCSCCNSLVSPSTFEAHAGWPSRRKPYLNIYTSNGVSLHELSISLSKDPRFCIRDNDDLCTICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCMNIFQREKYVEHNANARAAGRVAGVDPLEQIHQRCIRIVKTGEFDNDGCVLCRGRDFSKSFGPRTVIICDQCEREYHVGCLKDHNMQNLEALPEGNWFCCSDCNQVHTALLNLTACGEEELPVSLVSLIKRKREEKGLETEAGPDIKWMVLNWKMVASDENRQLLSKAVAIFHEQFDPIVDSASGLDFIPAMLYGRSINGHDFGGMYCAMLTVNQVVVSAGIFRIFGSEVAELPLVATIADYQGQGYFQSLFACIERLLGSLNVRHLVLPAAEEAESIWTSKFGFKKLGQDEINNYKRQYRLMAFQGTPLLQKPVPAP* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0331 929 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 718 IPR013083 -
Lan7g0331 929 Pfam PHD-finger 572 613 IPR019787 -
Lan7g0331 929 ProSitePatterns Zinc finger PHD-type signature. 572 611 IPR019786 -
Lan7g0331 929 SMART PHD_3 659 715 IPR001965 -
Lan7g0331 929 SMART PHD_3 571 612 IPR001965 -
Lan7g0331 929 SUPERFAMILY FYVE/PHD zinc finger 560 614 IPR011011 -
Lan7g0331 929 MobiDBLite consensus disorder prediction 32 206 - -
Lan7g0331 929 ProSiteProfiles Zinc finger PHD-type profile. 569 614 IPR019787 -
Lan7g0331 929 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 632 IPR013083 -
Lan7g0331 929 ProSiteProfiles Zinc finger PHD-type profile. 657 717 IPR019787 -
Lan7g0331 929 PANTHER AUTOIMMUNE REGULATOR 1 925 - -
Lan7g0331 929 SUPERFAMILY FYVE/PHD zinc finger 654 713 IPR011011 -
Lan7g0331 929 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 815 903 IPR016181 -
Lan7g0331 929 PANTHER AUTOIMMUNE REGULATOR 1 925 - -
Lan7g0331 929 CDD PHD1_AIRE 571 611 - -
Lan7g0331 929 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 766 927 IPR000182 GO:0016407
Lan7g0331 929 MobiDBLite consensus disorder prediction 35 57 - -
Lan7g0331 929 MobiDBLite consensus disorder prediction 58 158 - -
Lan7g0331 929 Pfam Tify domain binding domain 505 553 IPR032308 -
Lan7g0331 929 Pfam Tify domain binding domain 325 378 IPR032308 -
Lan7g0331 929 Gene3D - 756 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0331 Lan-Chr7 2219636 2230128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0331 290 926 PHD Transcription Factor Family AT2G36720 44.073 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan7g0331 TDBD 5.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0331 - - lang:109351691 1864.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0331 7 2219636 2230128 Lan7g0331 7 2219636 2230128 ECH
Lan6g1912 6 30095302 30101977 Lan7g0331 7 2219636 2230128 PCT
Lan7g0331 7 2219636 2230128 Lan6g1912 6 30095302 30101977 PCT