Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0328 ATGATGCCTACACCAACATCTGGTGATTTCTCAAATGCCCCAGAAGGGTTGCCTCATGTGACAGGATATTTGGTTTCACCCTCTAGTGGTTATGGTTCATCATACTCTAGTTCCCTCCTCTTCTATCTCACTGTCCTCAAGGAAAAGTTTAATGAGTTGCAGAACCTGGTAGGTGTAAATTGTCCCCTTCAACACACCCTACACAACTTACCTAATTCCATGGCTGTTTCCAACATGAACTCCACAATCCAGGAAATTATATTGGCCGCAAATTCAATGATGGTTTCTCTAGGTTCCACTACACCAGGTACTAATACTACTACTTTCACTGACCAACAATTGCACCAGCAGCATCAATCAAACAGTGATAACAATTATAGAAGTGTGCTTAGTAGTAGTAACATATGTCATGATAATATTAGAGAGCACAGTTTCTTCTCTAATATTGAGGCAGATGAACTAGATTGGTTTGCTGAAAGCTATGATGATAAAAACAATAGCAATAGTACTAGTAACATTACATATAATGATAATGATGGATGCATTGGGGAATTGCTTTCTAGGGATGAAACAGACATAATTGAATTCGATGCTGCTGATTTATTGGCTAGCTATACACATTTTTGCGATGTTTGTGGGAAAGGGTTTAAGCGCGACGCGAATTTGAGGATGCACATGAGAGCACATGGGGATGAGTACAAAACCACTGAAGCCTTAAGTAACCCAATGAAAAACAAAGGGATTATGAGTATGAAGTCAATTAAGAAGAAATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAATAAAAAACATGCCAAGTTCCAACCCTTGAAGTCAATGATTTGTGTGAAAAATCATTACAAGAGAACCCACTGTCCTAAAATATATGTGTGCAAGATGTGTAACCTGAAACAGTTCTCAGTACTATCTGATTTGAAGACACATGAGAAGCATTGTGGGGATCCCAAGTGGGAGTGCTTGTGTGGCAATACATTTTCTAGGAAGGACAAACTTATGGGTCATGTTGCCTTGTTCGTTGGCTTGTCATCATACACAGGAAAATTAGAACACGAGTGTATCCTTCATTGA 1089 0.393 MMPTPTSGDFSNAPEGLPHVTGYLVSPSSGYGSSYSSSLLFYLTVLKEKFNELQNLVGVNCPLQHTLHNLPNSMAVSNMNSTIQEIILAANSMMVSLGSTTPGTNTTTFTDQQLHQQHQSNSDNNYRSVLSSSNICHDNIREHSFFSNIEADELDWFAESYDDKNNSNSTSNITYNDNDGCIGELLSRDETDIIEFDAADLLASYTHFCDVCGKGFKRDANLRMHMRAHGDEYKTTEALSNPMKNKGIMSMKSIKKKYSCPQEGCRWNKKHAKFQPLKSMICVKNHYKRTHCPKIYVCKMCNLKQFSVLSDLKTHEKHCGDPKWECLCGNTFSRKDKLMGHVALFVGLSSYTGKLEHECILH* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0328 362 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 31 351 IPR044300 GO:0010044|GO:0010447
Lan7g0328 362 PANTHER OS08G0562300 PROTEIN 31 351 - -
Lan7g0328 362 Gene3D Classic Zinc Finger 207 259 - -
Lan7g0328 362 Pfam C2H2-type zinc finger 207 229 - -
Lan7g0328 362 Gene3D Classic Zinc Finger 294 344 - -
Lan7g0328 362 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Lan7g0328 362 SMART c2h2final6 207 229 IPR013087 -
Lan7g0328 362 SMART c2h2final6 296 318 IPR013087 -
Lan7g0328 362 SMART c2h2final6 258 291 IPR013087 -
Lan7g0328 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Lan7g0328 362 SUPERFAMILY beta-beta-alpha zinc fingers 206 233 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0328 Lan-Chr7 2209947 2211035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0328 36 347 C2H2 Transcription Factor Family AT5G22890 46.914 1.29e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan7g0328 zf-C2H2_6 0.00034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0328 - - gsj:114375424 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0154 10 999674 1001156 Lan7g0328 7 2209947 2211035 PCT
Lan3g0099 3 684321 685928 Lan7g0328 7 2209947 2211035 PCT
Lan7g0328 7 2209947 2211035 Lan10g0154 10 999674 1001156 PCT
Lan7g0328 7 2209947 2211035 Lan3g0099 3 684321 685928 PCT