Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0299 ATGACTAAGGATGTTGAGGTTCAAGAGCATCAAGGAGGAGGAGAGTACTCTGCTAAGGATTACCAAGACCCACCACCAGCACCGTTGTTTGATTTGGATGAGTTGAGAAAGTGGTCATTGTATAGAGCAGTTATAGCTGAGTTCATAGCAACACTTCTGTTCCTTTACATAACAATATTGACCATTATTGGTTACAATAGCCAGACTGATAAGATCACAGGTGGTACTGAATGTGATGGAGTTGGTCTTTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATTTCTGGAGGACACATAAACCCAGCAGTGACATTTGGGCTATTCGTGGGACGCAAGGTGTCACTAATAAGGGCGTTGTTGTACATAATAGCACAGAGTGCTGGTGCTATTGCAGGAGCTGGACTAGTGAAGGGGTTCCAAAAATCATACTTTGATAGGTATGGAGGTGGTGCTAACTTTGTTCAACCTGGCTACAACAAAGGCACTGCTTTGGGTGCTGAGATTATTGGTACCTTTGTTCTTGTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGAAATGCTAGAGACTCGCATGTTCCTGTATTGGCACCACTACCCATTGGATTTGCTGTGTTCATGGTTCATTTGGCTACAATCCCAGTTACTGGTACTGGCATCAACCCAGCAAGAAGTCTTGGATCTGCTGTCATTTACAACAAGGAGAAAATCTGGGATGACCATTGGATTTTCTGGGTTGGACCACTTATTGGAGCATTTGCAGCTGCAGTGTACCACCAATACATTCTTAGAGCAGCAGCCATTAAAGCTTTTGGATCCTTCAGGAGCAACAATTAA 867 0.4394 MTKDVEVQEHQGGGEYSAKDYQDPPPAPLFDLDELRKWSLYRAVIAEFIATLLFLYITILTIIGYNSQTDKITGGTECDGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRALLYIIAQSAGAIAGAGLVKGFQKSYFDRYGGGANFVQPGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVIYNKEKIWDDHWIFWVGPLIGAFAAAVYHQYILRAAAIKAFGSFRSNN* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0299 288 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 PANTHER AQUAPORIN PIP2-4-RELATED 1 287 - -
Lan7g0299 288 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Lan7g0299 288 CDD MIP 42 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 Pfam Major intrinsic protein 34 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 Gene3D Glycerol uptake facilitator protein. 27 288 IPR023271 -
Lan7g0299 288 SUPERFAMILY Aquaporin-like 34 274 IPR023271 -
Lan7g0299 288 TIGRFAM MIP: MIP family channel proteins 46 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan7g0299 288 MobiDBLite consensus disorder prediction 1 22 - -
Lan7g0299 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0299 Lan-Chr7 1926687 1928674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0299 1 286 Major Intrinsic Protein MIP AT5G60660 77.622 2.25e-166 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0299 K09872 - gmx:100818032 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0299 7 1926687 1928674 Lan7g0299 7 1926687 1928674 ECH
Lan5g1175 5 25812156 25815441 Lan7g0299 7 1926687 1928674 ECH
Lan7g0299 7 1926687 1928674 Lan8g1669 8 23646590 23648509 LSH
Lan7g0299 7 1926687 1928674 Lan13g0379 13 2554356 2556148 LSH