Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0295 ATGAGTAGTAGTGAGGAAAAAAAGCCTGAGACTTTGAGTGATGAAGAACATGATGCTGCAACTTTTTCTTGCAGAAGAATAGTTTCTCTTCCTGTCCAAACGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAAAATCTTCTCCTAGAAATACCTTCAAGAACACCAGAGGAGTGCTCTCAAGATTTTGTTGCAATCAAAATGCCGATGACACCAAGTCCAACTCCCACTCCCAAGAGAGTGAATTTTCTCGTGACTTCTCGCTCCGTTGATGCTCCAACAAATAATGCTCATATGCCTCCAACTCCAAATTCTAGAGGCAAATCATCCAGAAGAAGCATCCTACCAAAATTGAGCTTCAGGTATAGGACTCATACAGATATTGAACAGGCTACTGCTGCAGCTCCTGAAGGTTCCTCTTCAGGCTATCGAGTAAAGCCTTCAATCTCAAGATCATTGTCCCTTTCTAAGATATTTACACCAAGGATTAAGAGAACATCATCATCACCAGTAGACGAAATTGGTCATTCAAACACTGAGTCTGTTCATGGTGGAAGTGTTGGTGGTCTTCTAAATAAAAGAGATGCTCAGCCACAAAAGAAGATAGCTCGCTCTCTTTCGGTGCCTGTCAACAACAAAGACAAAAGCATAAAGAGGATGGATTCATTTTTCCGCATTATTCCTTCCACTCCACGAGTAAAGGAAGGAAATGAATTGATCACATCCCCAACAAACGATACTGAAAACGATGACGGTGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTTGCTCACCAGGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTCCGGAACCTACCTGTCACTCTATTACGTATTCAAAGTGTTCGAAATCAGAATAGTGGAGCAAGGTCTCAGCTTGAACATGTAAATGGATACAGGGTTTGGCAAGAAGTACCGGTGCTTGTCATTATCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTTGGAAAAATGGGAACCGGTGCAATCGCCATATCTCTTCCATTTTCCTGTGTGCTAGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTTGCACATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCCACATTTGCTGGCTTTGGTGTGGTGATGAGTGGAAGTTCTATTCTTGTGGAGGCTTTTAGATGGAGAAGAAGATGGCAGGCTTTATCAGAACAGCAACATAGTCTTCAACTGATGACACAGCCAGTACAAAACTCTCGGCCTGTTAACACGCCGCATTCAGACCCTGCCGACGACAACTCTCAACCTGTGGTGCAAGATCAACAGAACTCAAGTCAAGGCTGA 1566 0.4323 MSSSEEKKPETLSDEEHDAATFSCRRIVSLPVQTVDDPMGITEETTHVPPRKRQNLLLEIPSRTPEECSQDFVAIKMPMTPSPTPTPKRVNFLVTSRSVDAPTNNAHMPPTPNSRGKSSRRSILPKLSFRYRTHTDIEQATAAAPEGSSSGYRVKPSISRSLSLSKIFTPRIKRTSSSPVDEIGHSNTESVHGGSVGGLLNKRDAQPQKKIARSLSVPVNNKDKSIKRMDSFFRIIPSTPRVKEGNELITSPTNDTENDDGDGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNQNSGARSQLEHVNGYRVWQEVPVLVIISMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEAFRWRRRWQALSEQQHSLQLMTQPVQNSRPVNTPHSDPADDNSQPVVQDQQNSSQG* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0295 521 SMART ringv_2 272 321 IPR011016 GO:0008270
Lan7g0295 521 CDD RING_CH-C4HC3_MARCH 273 321 - -
Lan7g0295 521 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 492 - -
Lan7g0295 521 PANTHER OS02G0165000 PROTEIN 36 492 - -
Lan7g0295 521 MobiDBLite consensus disorder prediction 491 521 - -
Lan7g0295 521 MobiDBLite consensus disorder prediction 176 213 - -
Lan7g0295 521 SUPERFAMILY RING/U-box 269 324 - -
Lan7g0295 521 MobiDBLite consensus disorder prediction 244 263 - -
Lan7g0295 521 ProSiteProfiles Zinc finger RING-CH-type profile. 265 327 IPR011016 GO:0008270
Lan7g0295 521 MobiDBLite consensus disorder prediction 99 123 - -
Lan7g0295 521 MobiDBLite consensus disorder prediction 99 121 - -
Lan7g0295 521 MobiDBLite consensus disorder prediction 1 22 - -
Lan7g0295 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 328 IPR013083 -
Lan7g0295 521 MobiDBLite consensus disorder prediction 176 194 - -
Lan7g0295 521 Pfam RING-variant domain 273 320 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0295 Lan-Chr7 1896649 1900752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0295 270 327 C3H Transcription Factor Family AT2G37950 49.153 4.61e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0295 - - gmx:100788108 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0295 7 1896649 1900752 Lan7g0295 7 1896649 1900752 ECH
Lan7g0295 7 1896649 1900752 Lan8g1673 8 23663830 23668456 LSH
Lan6g1942 6 30385047 30389471 Lan7g0295 7 1896649 1900752 PCT
Lan7g0295 7 1896649 1900752 Lan6g1942 6 30385047 30389471 PCT