Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0227 ATGAATTCCGAAACGTCGTCGTACTGGTGCTACAGTTGCACCCGCAACGTTCACCTTCTCAACCACAACAACATCTCTTGTCCCCACTGTGAAACCGGTTTCCTCGAACAGATCCAACCCGATCCATCACCCAATCACCCTCTCACTCCTTTCCCCGACGCTTCAACGTTAACCAGACAAGCCCTTCGCCGGAGACGCCGCAACCCCGGTAACCCCTCGCCGTTCAACCCCGTCATCGTTCTACGCTCACCTGGAGAGGACGGCGCCGATCATGATGGTAGCATCTTTGAATTGTACTATGATGACGGCGATGGCACCGGTCTCCGCCCCTTGCCGCCGACGATGTCTGAGTTCTTGTTAGGATCTGGATTCGATCGGTTGCTGGAGCAGTTCGCGCAGATCGATATGAACGGGTTTGGGAGACCTGAGAATCCGCCTGCGTCGAAGGCGGCAATTGAATCGATTCCGACGGTCAAGATCGAAGAAACGCACGTATGCACCGATTCGCACTGTGCGGTTTGCAAAGAACCGTTTGAGCTTGGTTCTGAGGCGCGTGAGTTACCATGCCAGCATATTTATCACTCCGATTGCATCATTCCATGGCTATCGTTGCGGAACTCATGCCCTGTGTGCCGAAGCGAGCTTCCTTCCGAACAGAACCCTCCAGTTTCGACTCAAATCGACGAAGAATCGATCGGTTTAACAATATGGAGGTTACCAGGCGGCGGATTCGCCGTCGGTAGGTTTTCCGGTGGACGTAGAGCCGGCGAAAGTAATTTACCGGTTGTGTACACGGAGATGGATGGTGGTATGAATAATACAAGCGTAACACCGAGAATGATTTCACGGTCAGTGAGAAGCAATAGGGTTAGGGAAAGTGGTGGTGTTGGTAGGTCTTTTCGTAATTTGTTATCATTCTTTGGGAGAATTGGGTCTAGGTCTTCTTCTCAGAGTAGAAGCCGTAACCGATTTAGTTCTTTATTCAATAGGCTACGAAGCAGAACATCTGTTATGGAAGTTTAA 1023 0.5093 MNSETSSYWCYSCTRNVHLLNHNNISCPHCETGFLEQIQPDPSPNHPLTPFPDASTLTRQALRRRRRNPGNPSPFNPVIVLRSPGEDGADHDGSIFELYYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIDMNGFGRPENPPASKAAIESIPTVKIEETHVCTDSHCAVCKEPFELGSEARELPCQHIYHSDCIIPWLSLRNSCPVCRSELPSEQNPPVSTQIDEESIGLTIWRLPGGGFAVGRFSGGRRAGESNLPVVYTEMDGGMNNTSVTPRMISRSVRSNRVRESGGVGRSFRNLLSFFGRIGSRSSSQSRSRNRFSSLFNRLRSRTSVMEV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0227 340 SMART ring_2 171 211 IPR001841 -
Lan7g0227 340 CDD RING-H2_RNF126_like 171 212 - -
Lan7g0227 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 297 - -
Lan7g0227 340 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Lan7g0227 340 Pfam Ring finger domain 170 212 IPR001841 -
Lan7g0227 340 Pfam zinc-ribbon 6 38 IPR039525 GO:0061630
Lan7g0227 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 218 IPR013083 -
Lan7g0227 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 2 297 - -
Lan7g0227 340 SUPERFAMILY RING/U-box 151 218 - -
Lan7g0227 340 Pfam Protein of unknown function (DUF1117) 232 338 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0227 Lan-Chr7 1406630 1407994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0227 110 220 C3H Transcription Factor Family AT5G01980 46.847 1.46e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0227 - - gmx:100792874 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0227 7 1406630 1407994 Lan7g0227 7 1406630 1407994 ECH
Lan7g0227 7 1406630 1407994 Lan8g1731 8 24078358 24079522 LSH
Lan6g1987 6 30740158 30741361 Lan7g0227 7 1406630 1407994 PCT
Lan7g0227 7 1406630 1407994 Lan6g1987 6 30740158 30741361 PCT