Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0197 ATGGATTCATCTGATGATATGCACGATGCCAACGACATCGAGTCCCTCGATGAAGATTTCTACAGCGACGATGTTCCCATGGATTACTACAGCGACTACGACGATGACGCTGCCGATGATTACTTCGACGATGCGGATGACGCCGACCGAATTTTCTCTCGTCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCAGATATCCGGCAAAGACAGGACGAGGACGTCAATAGAGTTGCATCGGTTCTTTCCATATCGAAAGTTTCTGCAAGCATACTACTCCGTCACTACAATTGGAGTGTGACTAAAGTGCATGATGCATGGTTTGCTGATGAAGATGGTGTCCGGAAAGCAGTTGGCTTGTTGGAGCAGCCAATTGTCCAGTGTCCTAATGATGAAGAGCCTACTTGTGGCATCTGCTTTGAAAATTATCCCTGTTCTAAGATTGCAATGGCTTCTTGTGGTCATCCCTACTGTATCTCATGTTGGGGAGGATATATTGGCACATCCATTAATGATGGTCCTGGATGTTTGACGCTGAGATGTCCTGATCCAACTTGTGGTGCTGCTGTTGGTCAAGATATGATTGATCTTGTAGCATCTGATGAAGATAAACATAAGTATGGCCATTACCTTCTAAGGTCTTATATTGAGGACAATAAGATGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAGTATGCAGTTAATTTTGATGCTGGCAGTGCAAATTATGATGTCTCTTGCCTCTGTTCATATTGCTTTTGTTGGAATTGCACCGAGGAGGCTCACCGTCCAGTGGACTGTGGCACAGTGGCAAAGTGGATTTTGAAGAACAGCGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCTATTGAAAAAAACCAAGGGTGCATGCACATGACATGTACTCCACCCTGTAAATATGAATTTTGCTGGCTATGCCTTGGTGTATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAATCAGCTAAGCAAGAGGGAGTGTATGATGATTCTGAAAAGAGAAGAGAAATGGCAAAGAATTCACTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCTAGACAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGTCAGCCTGAGTCACAACTTAAGTTCATAACCGAGGCCTGGCTACAAATCGTTGAGTGTAGGCGAGTGCTGAAATGGACATATGCATATGGTTACTATTTACCAGAGAATGAGCATGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTACATCCATTCATCAACGATGATGGCCCATCTAGAGAATTTAATGACTTTCGTACAAAGCTAGCTGGGTTGACTAGTGTAACTAAGAACTACTTTGAGAACTTAGTTAGAGCATTAGAGAGTGGTCTAACTGATGTGGATGCTGATGGAGCTGCCTCTAGCAAAGCAACAAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTTTGCGAAGCAGCTTGTCCAACAGGATGACCGATGATAGTCATTGGTTTTGCGAGCAATGTACCTATGCAAATGTCAAATCTGCCACCGCATGTCAGATTTGCAATCATCAGCGTCGATGA 1767 0.4414 MDSSDDMHDANDIESLDEDFYSDDVPMDYYSDYDDDAADDYFDDADDADRIFSRRPEQNFTILKESDIRQRQDEDVNRVASVLSISKVSASILLRHYNWSVTKVHDAWFADEDGVRKAVGLLEQPIVQCPNDEEPTCGICFENYPCSKIAMASCGHPYCISCWGGYIGTSINDGPGCLTLRCPDPTCGAAVGQDMIDLVASDEDKHKYGHYLLRSYIEDNKMSKWCPAPGCEYAVNFDAGSANYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYESAKQEGVYDDSEKRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPENEHAKKQFFEYLQGEAESGLERLHQCAEKELHPFINDDGPSREFNDFRTKLAGLTSVTKNYFENLVRALESGLTDVDADGAASSKATSSKNAAGSSKGRGGRGKGTLRSSLSNRMTDDSHWFCEQCTYANVKSATACQICNHQRR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0197 588 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Lan7g0197 588 SUPERFAMILY RING/U-box 131 218 - -
Lan7g0197 588 ProSiteProfiles Zinc finger RanBP2 type profile. 560 588 IPR001876 -
Lan7g0197 588 Gene3D - 264 519 - -
Lan7g0197 588 SUPERFAMILY RING/U-box 207 275 - -
Lan7g0197 588 MobiDBLite consensus disorder prediction 11 27 - -
Lan7g0197 588 SUPERFAMILY Ran binding protein zinc finger-like 560 587 IPR036443 -
Lan7g0197 588 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Lan7g0197 588 MobiDBLite consensus disorder prediction 523 553 - -
Lan7g0197 588 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 536 - -
Lan7g0197 588 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Lan7g0197 588 SMART ibrneu5 272 342 IPR002867 -
Lan7g0197 588 SMART ibrneu5 206 268 IPR002867 -
Lan7g0197 588 MobiDBLite consensus disorder prediction 1 27 - -
Lan7g0197 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 218 IPR013083 -
Lan7g0197 588 MobiDBLite consensus disorder prediction 524 538 - -
Lan7g0197 588 ProSiteProfiles Zinc finger RING-type profile. 137 183 IPR001841 -
Lan7g0197 588 SUPERFAMILY RING/U-box 287 335 - -
Lan7g0197 588 Pfam Ariadne domain 355 514 IPR045840 -
Lan7g0197 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 536 IPR031127 GO:0004842|GO:0016567
Lan7g0197 588 Pfam IBR domain, a half RING-finger domain 285 332 IPR002867 -
Lan7g0197 588 Pfam IBR domain, a half RING-finger domain 207 268 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0197 Lan-Chr7 1194288 1200430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0197 17 587 ARIADNE family AT1G65430 68.174 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0197 K11968 - gmx:100810427 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0197 7 1194288 1200430 Lan13g0288 13 1853329 1859752 LSH
Lan6g2175 6 32146810 32155445 Lan7g0197 7 1194288 1200430 PCT
Lan3g0260 3 1698556 1706088 Lan7g0197 7 1194288 1200430 PCT
Lan7g0197 7 1194288 1200430 Lan6g2175 6 32146810 32155445 PCT
Lan7g0197 7 1194288 1200430 Lan3g0260 3 1698556 1706088 PCT