Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0168 ATGGATGATTACGTCACCAGCGATGACGATTACCATTACTCCGACGATCAAGATTACTCTGCCGACGCTTATGAGAACGATGAAACCGATTATCAGTTGGTTACTTCAAAGGGTCCCTCTACTCAGGTGATTACAAAAGAGTCACTGCTAGCTGCACAGAGGGAGGATTTGCGCCAGGTGATGGACATGCTATCAGTGAAAGAACAACATGCACGGACCTTGCTTATTTATCATCGCTGGGATGTGCAGAAGTTGTTTGCAGTGTATGTGGACAAGGGGATAGCACATCTCTTTGCTGAAGCTGGTGTTACTGTGAATAAACACCACTGTGACTCATCAGTTCGCTCTTTGATGTGTGAGATCTGCACAGACGATGTTCCTAGTGATGAAGCAACAAGCATGGACTGTGGTCACTGTTTTTGCAACTCATGTTGGACGGAGCATTTTGTTGTCAAGATAAATGAGGGCCAAAGTAAACGCATTAGATGCATGGCACATAAATGCTATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTACTCAGTAGAAAATACCCTGATATGGCAGAGAAGTATGAACGCTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGAGTTAAATGGTGTCCTAGCACGCCTCATTGCGGGAATGCAATACGTGTTGATGATGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTCTGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGCTAAGAAGTGCCGAGATGAATCAGAAACTGTTAATTGGATGACCGCTCATACAAAACCTTGTCCAAAGTGCCACAAGCCAGTGGAGAAGAATGGTGGATGTAACTTGGTTAGCTGTATTTGTGGCCAACCATTCTGTTGGGTGTGTGGTGGAGCCACTGGCCGAGATCATACTTGGTCAAGTATAACTGGTCATAGCTGCGGTCGCTATAAAGACCAAGAAAAATCGGCGGAACAGGCAAAGCGAGATCTATATCGTTATATGCACTATCATAACCGCTATAAAGCCCACACCGACTCCTTTAAGCTTGAAACTAAATTGAAAGAGATCATACAAGGAAAGATTGATATTTCAGAAGAAAAAGATTCTAAAGTCAGAGATTATAGCTGGGTAATTAATGGTCTCTCCAGACTTTTCAGATCTAGGCGCATCCTATCATATTCATATGCATTTGCGTTTTATATGTTTGGTGATGAGCTTTTTAAGGACGAATTGTCAGAATCTCAAAGGGAAATAAAACAGAATTTATTTGAGGATCAACAGCAACAGCTTGAGGCAAATATTGAAAAGATCTCTAAAATTTTGGAGGAGCCTTTTGATACCTTTCCCGATGACAAAGTTATGGAGATAAGAATGCAGATAATCAATCTGTCAGCAGTTATTGACAAACTTTGTCAAAAAATGTATGACTGCATCGAGAATGATTTACTGGGTTCTCTCCATCACATTCACTGCATAGCTCCATACAAGTCAAAGGGCATAGAGAGGGCATCAGAACTTTCAGTTTGGAGCAATAAAGCTAATAATATCGGTGGAACAGCAGAAGTTGATCAGCCTTCTGGATCACGGAGCTCAGATGACCATGGATGTTCTTCCCGTAAACGTGCTAGAAAAGAAAGTGTTGGAGGAGGTAGTGGTGGTGGGTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1746 0.4158 MDDYVTSDDDYHYSDDQDYSADAYENDETDYQLVTSKGPSTQVITKESLLAAQREDLRQVMDMLSVKEQHARTLLIYHRWDVQKLFAVYVDKGIAHLFAEAGVTVNKHHCDSSVRSLMCEICTDDVPSDEATSMDCGHCFCNSCWTEHFVVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSRKYPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVDDDDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWMTAHTKPCPKCHKPVEKNGGCNLVSCICGQPFCWVCGGATGRDHTWSSITGHSCGRYKDQEKSAEQAKRDLYRYMHYHNRYKAHTDSFKLETKLKEIIQGKIDISEEKDSKVRDYSWVINGLSRLFRSRRILSYSYAFAFYMFGDELFKDELSESQREIKQNLFEDQQQQLEANIEKISKILEEPFDTFPDDKVMEIRMQIINLSAVIDKLCQKMYDCIENDLLGSLHHIHCIAPYKSKGIERASELSVWSNKANNIGGTAEVDQPSGSRSSDDHGCSSRKRARKESVGGGSGGGFFDLNLPAEFVDRN* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0168 581 ProSiteProfiles TRIAD supradomain profile. 115 330 IPR044066 -
Lan7g0168 581 MobiDBLite consensus disorder prediction 530 573 - -
Lan7g0168 581 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Lan7g0168 581 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 514 - -
Lan7g0168 581 Pfam IBR domain, a half RING-finger domain 190 253 IPR002867 -
Lan7g0168 581 SUPERFAMILY RING/U-box 261 318 - -
Lan7g0168 581 SUPERFAMILY RING/U-box 190 259 - -
Lan7g0168 581 Gene3D - 249 496 - -
Lan7g0168 581 SMART ibrneu5 261 326 IPR002867 -
Lan7g0168 581 SMART ibrneu5 190 253 IPR002867 -
Lan7g0168 581 MobiDBLite consensus disorder prediction 530 545 - -
Lan7g0168 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 514 IPR031127 GO:0004842|GO:0016567
Lan7g0168 581 Pfam Ariadne domain 330 581 IPR045840 -
Lan7g0168 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Lan7g0168 581 SUPERFAMILY RING/U-box 117 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0168 Lan-Chr7 1029534 1035311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0168 61 541 ARIADNE family AT2G16090 69.057 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0168 K11968 - gmx:100783343 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0168 7 1029534 1035311 Lan8g1781 8 24424990 24429279 LSH
Lan7g0168 7 1029534 1035311 Lan13g0255 13 1614017 1617335 LSH