Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0103 ATGGGTTCAGAGAGAGTAACGGGGAAGGTGAAGTGGTTCAATGACACCAAGGGATTTGGATTCATTACCCCTGATGATGGTGGTGATGACCTTTTCGTTCACCAATCTCAGCTTAAATCTGATGGTTTTCGATCCCTAGCAGAAGGTGAATCTGTTGAGTTTCAAATCGAAGCTGATTCCGATGGTCGATCCAAGGCTGTTGATGTCACTGGTCCTGATGGTGCCAACGTGCAGGGTAGCAGACGCGGCGGCGGCGCTGGCGGTGGCGCTGGAGGAAGTTATGGCGGTGGAAGAGGCGGAGGAGGATATGGTGGTGGTGGACGCGGTGGAGGACGTGGTGGTAGAGGAGGCTATGGTGATGGAGGCTACGGAGGTGGCTATGGAGGTGGAGGTGGAGGTGGCGGTGGAGGTTGTTACAGCTGTGGCGAGTCTGGTCACATTGCTAGGGAGTGTCCTCAAGGAGGAGGTGGTGGTGGTGGTGGAAGATATGGTGGCGGTGGCGGTGGAGGTGGAGGTGGCGGAAGCTGCTACAACTGTGGCGAGTCTGGCCATTTCGCAAGGGATTGCTCAACTGCTGGTGGTCGTTGA 588 0.5612 MGSERVTGKVKWFNDTKGFGFITPDDGGDDLFVHQSQLKSDGFRSLAEGESVEFQIEADSDGRSKAVDVTGPDGANVQGSRRGGGAGGGAGGSYGGGRGGGGYGGGGRGGGRGGRGGYGDGGYGGGYGGGGGGGGGGCYSCGESGHIARECPQGGGGGGGGRYGGGGGGGGGGGSCYNCGESGHFARDCSTAGGR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0103 195 MobiDBLite consensus disorder prediction 56 109 - -
Lan7g0103 195 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lan7g0103 195 Gene3D - 2 83 IPR012340 -
Lan7g0103 195 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lan7g0103 195 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lan7g0103 195 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lan7g0103 195 PANTHER COLD SHOCK PROTEIN 1 3 191 - -
Lan7g0103 195 Gene3D - 134 160 - -
Lan7g0103 195 Gene3D - 171 195 - -
Lan7g0103 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 191 - -
Lan7g0103 195 SMART csp_8 7 72 IPR011129 GO:0003676
Lan7g0103 195 Pfam Zinc knuckle 137 153 IPR001878 GO:0003676|GO:0008270
Lan7g0103 195 Pfam Zinc knuckle 175 190 IPR001878 GO:0003676|GO:0008270
Lan7g0103 195 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lan7g0103 195 ProSiteProfiles Zinc finger CCHC-type profile. 176 189 IPR001878 GO:0003676|GO:0008270
Lan7g0103 195 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lan7g0103 195 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lan7g0103 195 ProSiteProfiles Zinc finger CCHC-type profile. 138 153 IPR001878 GO:0003676|GO:0008270
Lan7g0103 195 SUPERFAMILY Retrovirus zinc finger-like domains 129 191 IPR036875 GO:0003676|GO:0008270
Lan7g0103 195 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lan7g0103 195 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Lan7g0103 195 SMART c2hcfinal6 175 191 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0103 Lan-Chr7 549326 550276 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lan7g0103 CSD 1.7e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0103 - - rcu:107262322 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0103 7 549326 550276 Lan8g1834 8 24754049 24755040 LSH
Lan7g0103 7 549326 550276 Lan13g0169 13 1018118 1019151 LSH