Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0102 ATGGGTTCAGAGAGAGTGACTGGGAAGGTGAAGTGGTTCAATGACACCAAGGGATTTGGATTCATTACCCCTGATGATGGTGGTGATGACCTTTTCGTTCACCAATCTCAGCTTAAATCTGATGGTTTTCGATCCCTAGCAGAAGGTGAATCTGTTGAGTTTCAAATCGAAGCTGATTCTGATGGTCGAACCAAGGCCGTTGATGTCACTGGTCCTGATGGTGCCAACGTGCAGGGTAGCAGACGCGGCGGAAGCGGCGGCGGAGGTGGATATGGCGATGGAAGAGGCGGAGGTGGTTATGGCGGTGGAGGACGCGGTGGAGGACGCGGTAGCAGAGGAGGCTATGGTGATGAAGGCTATTGA 363 0.5289 MGSERVTGKVKWFNDTKGFGFITPDDGGDDLFVHQSQLKSDGFRSLAEGESVEFQIEADSDGRTKAVDVTGPDGANVQGSRRGGSGGGGGYGDGRGGGGYGGGGRGGGRGSRGGYGDEGY* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0102 120 Gene3D - 2 83 IPR012340 -
Lan7g0102 120 PANTHER COLD SHOCK PROTEIN 2 1 111 - -
Lan7g0102 120 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lan7g0102 120 SMART csp_8 7 72 IPR011129 GO:0003676
Lan7g0102 120 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lan7g0102 120 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lan7g0102 120 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lan7g0102 120 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 111 - -
Lan7g0102 120 Pfam 'Cold-shock' DNA-binding domain 6 71 IPR002059 GO:0003676
Lan7g0102 120 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lan7g0102 120 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lan7g0102 120 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lan7g0102 120 MobiDBLite consensus disorder prediction 58 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0102 Lan-Chr7 546313 546974 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lan7g0102 CSD 5e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0102 - K09250 lang:109353206 162.54