Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0092 ATGAATTCTCGATCAGGTAGGGCACCAGTGAGAAGTTATAGACGGAGGAAAACATTTTTGGACATTGACCTTAACCATCTTCCATTTGGTGAGAATCGAGAGCAGGAGGAGGGAACTTCAAATCAGTTAGGTATTGAACAAGTTCAAGAATTGCAAGTTCATGAACAACCTCCAACAATTGATGTGGATGCGTTTGATGATGATGTTATTGAGTCTACTCCAAGGGCTTTTGCTGAGGCTAAAAACAAAAACAGTTCCAGAAGAAGTCGCAGGAGGACTATAGTTGATTTGGATTTAGAAGATCAGATAAGGGTAACAAACAGTAATTGCAACAAACGCAACAGAGTCACCCCAGGCCAACCAATTTTTAACTATGATCATTATGATCTTTGTATAAGTTCTGAAGGCAATAGCAGCCATAAGAGGAAAAATATGGCACCACCTGAAGCTCCAAAAGAGCCTGTCTTCAACTGTCCAATATGTATTGGGCCCTTGGTAGAAGAGGTATCAACAAAGTGTGGTCACATATTTTGCAAGTCTTGCATCAAGACTGCAATTAGCGCTCAAAATAAATGCCCAACATGCAGAAAGAAGATTACTGTAAGAGAGCTTATACGGGTGTTCCTCCCATCAGCTAGTTGA 642 0.4065 MNSRSGRAPVRSYRRRKTFLDIDLNHLPFGENREQEEGTSNQLGIEQVQELQVHEQPPTIDVDAFDDDVIESTPRAFAEAKNKNSSRRSRRRTIVDLDLEDQIRVTNSNCNKRNRVTPGQPIFNYDHYDLCISSEGNSSHKRKNMAPPEAPKEPVFNCPICIGPLVEEVSTKCGHIFCKSCIKTAISAQNKCPTCRKKITVRELIRVFLPSAS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0092 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 211 IPR013083 -
Lan7g0092 213 SMART ring_2 158 195 IPR001841 -
Lan7g0092 213 SUPERFAMILY RING/U-box 153 208 - -
Lan7g0092 213 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Lan7g0092 213 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Lan7g0092 213 Pfam Zinc finger, C3HC4 type (RING finger) 157 195 - -
Lan7g0092 213 PANTHER ELFLESS, ISOFORM B 2 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0092 Lan-Chr7 496286 498747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0092 1 211 C3H Transcription Factor Family AT5G48655 47.887 4.04e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0092 K22651 - gmx:100306616 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0092 7 496286 498747 Lan8g1843 8 24804166 24808585 LSH
Lan7g0092 7 496286 498747 Lan13g0155 13 939712 944048 LSH