Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0080 ATGGGAAAGTCTACTAAGAAATCTGCTACCAAAGTTGATGCTGCTCCAGCTGCAGTACTTCCACCTTCCAAGTCTGCCAAAAAGGGTAAGAGGCAGCCTGAAGATGAAATTGAAAAGGTGAGTGCAAAGAAGCAGAAGATAGAGGAGGTTACACAGAAGCAAAAGAAGGAAACGAAATTGCAAAAAATTAAGAAGGAAAGCAGTTCTGATGATTCTTCATCAGATTCTGAAGATGAGAAACCTGCTGCAAAGCTTGTTGCTCCTTCAAAAAAGCAACCTGCTGCTGAGAAACCTAAGGTGCAGAAGAAGGAAAGTAGTTCTGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCAGCAAAAACTCAACCAGCTAAAACTGGTACCCTTGCAAAGAAAGGCAAGCCAGCTCCAAGTTCCAGCTCATCGGATGAATCATCAGATGATGACTCTGACGAGGATGAAACTCCAAAGTCCAAGGTGGCTGCTGCTGCTAAGAATGGGTCTGCTCCCACAAAGAAGACTGTGCAACAAAGTGAAAGCACTGACTCCGATTCTGATGACAGTTCTGACGAGGACGATGCAACTAAATCTGCCAAGAAATTGCCTGCTGCTTCTGGTAAGAATGTGCCTGCTAAGAAGGTTGAGGCAGACTCAACTTCTGAAAGTAGTTCAGATGAGGATGATGATACAAAGCCTACTGTAACTGCTGTGTCCAAGGCTTCTGTTCCGAAGAAGAAAGTTGACACCTCAGATTCAGATGATAGCAGCTCTGATGAGGACGATGAAAATGCTGCGAAGACTGTTTCCAAAGCCAAGGCTGTGCCTGTTTCTAAGCAGGCTGCAAAGAAGTCAAAAAGTAGTTCCGATGAGAGTGATTCAGATGAAGAAGAGGATTCCTCGGATAGTGATGCTGAGAGTAAGAAAAATGCTAAAGCTTCTAATGGTAACAAGAAACCAGCACCTGTTGTGAAGGCAGCGAAAAAAGTGTCTAGTGATAGCTCATCAGATGATGAGGATGAGATGGATGTTGATGAGGATGATAGCTCTGATGAAAGTGATGATGAGCCTCAAAAGAAAAAGCCTGTGAAAGACTCCAAGGAAAGCTCTGATAGTTCAGAGGACTCGGAGGAAGAAAATGAGAAGGAACCCTCTAAAACTCCCCAGAAAAGCCCTAAAACCCCGACTACACCAAAAGCAAATAATGGTGGAACGAAGTCACTATTTATTGCCAACCTCTCATATAACGTGCAACGTTCTGATGTGGAAAATTTCTTCAAAGATGTTGGAGAGGTTGTTGATGTTCGTCTCGCCGTAGATGATGATGGGAGATTTAAGGGCTTTGGACATGTCGAGTTTGCAACATCTGAGGCAGCCCAAAATGCCCTCGAGTTGCATGAGCAAGAACTGCTGAATCGTCCTGTTCGGCTTGATTTAGCTCGTGAAAGAGGTGCATATACTCCGAACAGTGGGCCCAACAGCGGTAACTGGAACAACTCATCACAAAGTGGTGGAAGAGCCCAGTCTCAGACAGTGTTTGTTAGGGGTTTTGATAGATCCCTTGGAGAACATGAGGTAAAATCTAGCCTGGAAGAGCATTTTGGTACCTGCGGCCAGATTACAAGGATATCTGTGCCTAAAGATTATGATTCTGGTGAAGTGAAGGGGTTTGCTTACCTGGACTTCAGTGACGGTGATAGCTTGAGCAAAGCTCTGGAACTCCATGAATCTGAACTTGGAGGTTATACATTGACAGTGGATGAAGCCAAACCTAGAGATAATCAAGGTTCTGGTGGTGGGAGAGGTGCAGGTAGGAGTGGTGGTCGATTTGGTGGAAGGGGAGGTCGATTTGATGGAAGGGGCAGTGGTGGTCGATTTGGTGGTGGAAGAGGGGGTGGTGGTCGATTTGGTGGTGGCTTTGATGGCCGGGGGAGAGGACGCGGTGGTCGTGGAGGACCAAGTAGACCAAGCTTTGCTGCGGAAGGGAAGAAGACTACCTTCGCTGATGATGAATAG 2019 0.4577 MGKSTKKSATKVDAAPAAVLPPSKSAKKGKRQPEDEIEKVSAKKQKIEEVTQKQKKETKLQKIKKESSSDDSSSDSEDEKPAAKLVAPSKKQPAAEKPKVQKKESSSDDSSSESEDEKPAAKTQPAKTGTLAKKGKPAPSSSSSDESSDDDSDEDETPKSKVAAAAKNGSAPTKKTVQQSESTDSDSDDSSDEDDATKSAKKLPAASGKNVPAKKVEADSTSESSSDEDDDTKPTVTAVSKASVPKKKVDTSDSDDSSSDEDDENAAKTVSKAKAVPVSKQAAKKSKSSSDESDSDEEEDSSDSDAESKKNAKASNGNKKPAPVVKAAKKVSSDSSSDDEDEMDVDEDDSSDESDDEPQKKKPVKDSKESSDSSEDSEEENEKEPSKTPQKSPKTPTTPKANNGGTKSLFIANLSYNVQRSDVENFFKDVGEVVDVRLAVDDDGRFKGFGHVEFATSEAAQNALELHEQELLNRPVRLDLARERGAYTPNSGPNSGNWNNSSQSGGRAQSQTVFVRGFDRSLGEHEVKSSLEEHFGTCGQITRISVPKDYDSGEVKGFAYLDFSDGDSLSKALELHESELGGYTLTVDEAKPRDNQGSGGGRGAGRSGGRFGGRGGRFDGRGSGGRFGGGRGGGGRFGGGFDGRGRGRGGRGGPSRPSFAAEGKKTTFADDE* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0080 672 MobiDBLite consensus disorder prediction 488 510 - -
Lan7g0080 672 CDD RRM2_NUCLs 512 590 IPR034350 -
Lan7g0080 672 MobiDBLite consensus disorder prediction 355 372 - -
Lan7g0080 672 MobiDBLite consensus disorder prediction 584 672 - -
Lan7g0080 672 Gene3D - 496 626 IPR012677 -
Lan7g0080 672 Coils Coil 37 57 - -
Lan7g0080 672 MobiDBLite consensus disorder prediction 485 510 - -
Lan7g0080 672 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 511 592 IPR000504 GO:0003723
Lan7g0080 672 Gene3D - 329 492 IPR012677 -
Lan7g0080 672 MobiDBLite consensus disorder prediction 27 85 - -
Lan7g0080 672 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 289 661 - -
Lan7g0080 672 MobiDBLite consensus disorder prediction 1 407 - -
Lan7g0080 672 MobiDBLite consensus disorder prediction 337 354 - -
Lan7g0080 672 SMART rrm1_1 408 479 IPR000504 GO:0003723
Lan7g0080 672 SMART rrm1_1 512 588 IPR000504 GO:0003723
Lan7g0080 672 MobiDBLite consensus disorder prediction 390 407 - -
Lan7g0080 672 MobiDBLite consensus disorder prediction 95 122 - -
Lan7g0080 672 PANTHER BNACNNG45920D PROTEIN 289 661 - -
Lan7g0080 672 SUPERFAMILY RNA-binding domain, RBD 506 623 IPR035979 GO:0003676
Lan7g0080 672 CDD RRM1_NUCLs 408 484 IPR034349 -
Lan7g0080 672 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 407 483 IPR000504 GO:0003723
Lan7g0080 672 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 529 585 IPR000504 GO:0003723
Lan7g0080 672 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 476 IPR000504 GO:0003723
Lan7g0080 672 SUPERFAMILY RNA-binding domain, RBD 397 507 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0080 Lan-Chr7 404544 410026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0080 392 585 Eukaryotic Initiation Factors Gene Family AT4G34110 26.531 5.73e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0080 K11294 - ahf:112789008 384.03