Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0055 ATGGATGGCAATAGCAATAGCAATGATATAGAGTATGAGATGAGAGTAAGAGATAATAAGAAAGGAATGATGTACCTGGTGTGGGAAGATTTGAGTGTTATAGTTCCAAATTTTGGTAATGGACACACAAGGAGGTTGCTTAATAGGTTGAGTGGATATGCAGAACCTAATAAAATCATGGCTATTATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTTTCGCAGGTAGACTCTGCAGAAATGTTATCATGTCTGGAAAAGTGCTTCTAAATGGAAAGACTAGGAGATTAGACTATGGGGGTGTAGCTTATGTGACCCAAGAAGACATATTGTTGGGAACACTAACAGTTAGAGAGACAATTTCATACTCAGCCAATCTAAGGCTTCCAGCAACCATGACCAAAGAAGAGGTAAATAATACTATAGAGGGAACAATAATGGAGATGGGTCTTCAAGACTGTGCTGATAGGATTTTAGGGAATTGGCACTTAAGAGGTATAAGTGGCGGAGAAAAGAAAAGACTAAGCATAGCACTTGAAATCCTCACAAGGCCTAGTCTCTTGTTCCTTGATGAACCTACCAGTGGTCTGGATAGTGCTTCAGCATATTTTGTTGTACAAACTTTGAGAAACATAGCTCATGATGGAAAAACTGTTATCTCTTCCATACATCAACCAAGTAGTGAGGTTTTTGCACTCTTTGATGATCTCTTTCTGCTCTCTGGGGGTCAAACAATATACTTTGGAGCAGCTGAAAAGGCACTTGAGTTCTTTGCCAAAGCAGGATTCCCTTGTCCAAGTAGAAGAAACCCTTCTGATCATTTCCTCCGTTGTATTAATTCAGACTTTGACACTGTTACCACGACTATGATGGCCTTCCAGAGAATGCATGAACCAAAATCAACAGCATCATTGACAAACTTATCAACTGCAACAATCAGGGCAAAACTCATTGAGAAATACCGGTGGTCAGAATATGCAACTACTGCAAAAGCAAGAATAAAAGAAATCTCAAATATTGAAGGAGAAGATGCTGAAAGCAAAATCATGAGCCAAGACAATTGGTGGAAGCAACTATCAACATTGACTAGGAGATCTTTCTTGAACATGTCCAGAGACCTTGGGTACTATTGGATAAGGGTAGCAATCTATATTGCCTTATCTGTGTGTGTGGGTACGGTCTTTTTTGAAGTTGGAACCAGCTATAGTGCCATTTTTGCAAGAGGAGCATGTGGTGCTTTTATTTCAGGTTTCATGACATTCATGTCGATAGGAGGCTTCCCATCCTTCATAGAAGAAATGAAGGTCTTTTACAAAGAAAGGATTAATGGGCACTATGGAATTGCTGTCTACATAGTGTCTAATTTTTTGTCTTCCTTTCCCTTTGTGGCAATGATGTCCATTGCTACTGGCACTATAACCTATTATATGGTTAAGTTTCGTCCTGAGTTTTCACATCTTGTGTATATATGTCTTGATCTTATTGGCTGCATTGCCATTGTGGAGAGTTCCATGATGATTATAGCCTCACTAGTTCCCAACTACCTCATGGGATTGATAATTGGAGCAGGATATATTGGAGTAATGATGATGACTGCTGGCTATTTCCGACAGATCAGTGATCTTCCCAAAATCTTCTGGCGTTACCCAATTTCATACATCAATTATAGCGCATGGGGATTGCAGGGAGCTTTCAAAAATGACTTGATTGGGCTGGAGTTTGATCCATTAATACCCGGTGGCCCAAAACTGGAAGGAGAAATCATCCTCACCACCATGCTTGGTATGCGAGCTGATTATTCAAAATGGTGGGACTTAGCTGCAGTCATAGTCATCCTCATATTGCTTAGAGTTCTTTTCTTTTTCGTTCTTAAATTTAAGGAGAGAGCTTCACCTTTACTTCATAGTATCTATGCCAAGCAAGCTCTGCAACACATTAAGAAGCGACCTTCATTCAGGAATGTGGCACCATCTTTCCCTTCCAAGAGGCACCAATCACTGCATCCACTGTCTTCTCAAGAGGGTCTCAACTCCCCTATTCATCAGAACTTAGAAGCATCATTTGCTGATACGAACACAAAAGAATTACACACCATATCCGAATGTTATATGTAG 2124 0.4021 MDGNSNSNDIEYEMRVRDNKKGMMYLVWEDLSVIVPNFGNGHTRRLLNRLSGYAEPNKIMAIMGPSGSGKSTLLDAFAGRLCRNVIMSGKVLLNGKTRRLDYGGVAYVTQEDILLGTLTVRETISYSANLRLPATMTKEEVNNTIEGTIMEMGLQDCADRILGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAYFVVQTLRNIAHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGAAEKALEFFAKAGFPCPSRRNPSDHFLRCINSDFDTVTTTMMAFQRMHEPKSTASLTNLSTATIRAKLIEKYRWSEYATTAKARIKEISNIEGEDAESKIMSQDNWWKQLSTLTRRSFLNMSRDLGYYWIRVAIYIALSVCVGTVFFEVGTSYSAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERINGHYGIAVYIVSNFLSSFPFVAMMSIATGTITYYMVKFRPEFSHLVYICLDLIGCIAIVESSMMIIASLVPNYLMGLIIGAGYIGVMMMTAGYFRQISDLPKIFWRYPISYINYSAWGLQGAFKNDLIGLEFDPLIPGGPKLEGEIILTTMLGMRADYSKWWDLAAVIVILILLRVLFFFVLKFKERASPLLHSIYAKQALQHIKKRPSFRNVAPSFPSKRHQSLHPLSSQEGLNSPIHQNLEASFADTNTKELHTISECYM* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0055 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 270 IPR003439 GO:0005524
Lan7g0055 707 SMART AAA_5 56 255 IPR003593 -
Lan7g0055 707 Pfam ABC-2 type transporter 227 286 IPR043926 GO:0140359
Lan7g0055 707 Pfam ABC transporter 47 198 IPR003439 GO:0005524
Lan7g0055 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 264 IPR027417 -
Lan7g0055 707 CDD ABCG_EPDR 23 252 - -
Lan7g0055 707 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 21 679 - -
Lan7g0055 707 ProSitePatterns ABC transporters family signature. 170 184 IPR017871 GO:0005524
Lan7g0055 707 Gene3D - 13 265 IPR027417 -
Lan7g0055 707 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 21 679 - -
Lan7g0055 707 Pfam ABC-2 type transporter 361 570 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0055 Lan-Chr7 267592 272497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0055 45 241 Calmodulin-binding Proteins AT2G36910 31.336 3.51e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0055 K05681 - gmx:100788651 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0055 7 267592 272497 Lan7g0055 7 267592 272497 ECH
Lan5g1161 5 24890901 24898528 Lan7g0055 7 267592 272497 ECH
Lan7g0055 7 267592 272497 Lan8g1889 8 25117306 25124304 LSH
Lan7g0055 7 267592 272497 Lan13g0106 13 620964 626339 LSH