LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan7g0044	ATGATCGGGGAGAGCGTGAATGGTGGTGGCGGTGGCGGAGTGGTGGCGCCGTTTCTAAGCAAGACGTATGAAATGGTGGATGACTCATCAACAAACAGAGTAGTTTCGTGGGGAGATAATAACAATACATTCATCGTTTGGGATGTTTCACAACTCTCATCTCTTATCTTACCCAAATATTTCAAACATAACAATTTCTCCAGCTTCGTTCGCCAATTAAACACTTACGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGGTTTTTAAGGGGTCAAAAACAACTTTTGAAGAGTATCAGTAGGCGTAAATCTGCTCATGTAAATGGAAATAGTCAACAACCATCTCAGGTGCAGAATTCACCTGTTGGGGCGTGCGTTGAAGTTGGAAAGTTTGGGCTTGAAGAAGAGGTCGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAACAACAAATGACTGATAACCAATTACAAACTGTTGGGCAACGTATGCAGGTAATGGAGCAGCGTCAGCAGCAGATGATGTCATTCCTAGCTAAGGCTATGCATAGTCCAGGCTTCATGGCTCAATTTGTACATCAGCAGAATGAAAGTAATAGACACATCACTGTAGGAAGTAAAAAAAGGAGGCTCCAGAGGCAGGAAGAGGATAGTCTAGCCAGCAAGAATGTTCATATTGCTCATGATGGACGTGTTGTCAAGTACCAGCCTTCTATAAATGAGGCAGCAAAAGCATTCTTTAAGATATTGCAAATGAACAATTCCACCATGATGGAATCGTCAATTAAGAACCCTGATGCTTTCCTTATTGATGATGTTCCTATGGCCATTCCAGTAGATAGCAGCAGTTCCACCACTCAGGTTTCTAGTGTAACCCTTTCCGAGGTTCCACCTACTTCTGGGCAGTCATATATGGCAGTAGAATCACAATTTCCTGTCAATTGTATGCTAAATAGCACAACTGAGGTGCAATCTTCACCTGCTGTGTTGACTGATTGTGTCAAAGCAGCTCAAGTTCCCCACTTAACTGCGCATAATTGTCAAGACAACGTTTTGGATTTTTGTGATTTACAAGGGATTGGGCCAGGAAGCAGTTTCATGAATCCTGGTCTGAATTTTGTGGGGCCTGACACTAGGAATGCTGGGGAGATAGACATGATGTCAACTGTTTTAGATGGGACACTGTCTGTAGAAACTGATGCTTTATCACCCAATGCAGATGGAATTTCTAAGCTTCCAGGAATTAATGATGAATTCTGGGAAATGATTTTGAGTTCAAGCCCAGTTAGGGGAGATGCAGATGAAGGTACATGTAGCTCTTTGGGATGTGGTTTAACCCAAGACCATGAATTATCATCAGAAAAGGAGATTCAACAGGAAAATATGGACAAGAAACCTCAAATTGACCATCTTACTCAAAAGATGGGACTTCTTGCATCAAGGTCGTAA	1488	0.4214	MIGESVNGGGGGGVVAPFLSKTYEMVDDSSTNRVVSWGDNNNTFIVWDVSQLSSLILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKSAHVNGNSQQPSQVQNSPVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQMTDNQLQTVGQRMQVMEQRQQQMMSFLAKAMHSPGFMAQFVHQQNESNRHITVGSKKRRLQRQEEDSLASKNVHIAHDGRVVKYQPSINEAAKAFFKILQMNNSTMMESSIKNPDAFLIDDVPMAIPVDSSSSTTQVSSVTLSEVPPTSGQSYMAVESQFPVNCMLNSTTEVQSSPAVLTDCVKAAQVPHLTAHNCQDNVLDFCDLQGIGPGSSFMNPGLNFVGPDTRNAGEIDMMSTVLDGTLSVETDALSPNADGISKLPGINDEFWEMILSSSPVRGDADEGTCSSLGCGLTQDHELSSEKEIQQENMDKKPQIDHLTQKMGLLASRS*	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan7g0044	495	PRINTS	Heat shock factor (HSF) domain signature	18	41	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan7g0044	495	PRINTS	Heat shock factor (HSF) domain signature	56	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan7g0044	495	PRINTS	Heat shock factor (HSF) domain signature	69	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan7g0044	495	MobiDBLite	consensus disorder prediction	469	483	-	-
	Lan7g0044	495	Coils	Coil	135	162	-	-
	Lan7g0044	495	Pfam	HSF-type DNA-binding	18	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan7g0044	495	SMART	hsfneu3	14	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan7g0044	495	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE	13	468	-	-
	Lan7g0044	495	SUPERFAMILY	"Winged helix" DNA-binding domain	15	107	IPR036390	-
	Lan7g0044	495	ProSitePatterns	HSF-type DNA-binding domain signature.	57	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lan7g0044	495	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	13	468	IPR027725	-
	Lan7g0044	495	Gene3D	-	13	108	IPR036388	-
	Lan7g0044	495	MobiDBLite	consensus disorder prediction	469	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan7g0044	Lan-Chr7	216629	220504	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan7g0044	15	495	HSF	AT5G16820	49.593	5.43e-139	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lan7g0044		HSF_DNA-bind	4.5e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan7g0044	K09419		-	gmx:100793665	567.385